Os04g0492600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Anticodon-binding domain containing protein.
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Os04g0492600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Anticodon-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.14 | 0.373 | 10.7 | -0.305 | 2.29 | 0.837 | -0.0813 | 0.0936 | 0.216 | 16.7 | 25.65 | 11 | -- | -- |
| 63.13 | 0.373 | 10.7 | -0.295 | 2.28 | 0.826 | -0.117 | -- | 0.218 | 16.7 | 25.7 | 9 | -- | -- |
| 63.13 | 0.373 | 10.7 | -0.317 | 2.29 | 0.835 | -- | 0.141 | 0.213 | 16.7 | 25.7 | 8 | -- | -- |
| 63.12 | 0.37 | 10.7 | -0.296 | 2.29 | 0.826 | -- | -- | 0.217 | 16.7 | 25.8 | 3 | -- | -- |
| 313.4 | 0.829 | 10.6 | -0.679 | -- | -10.7 | -- | -25.1 | 0.0122 | -- | 16.8 | 32 | -- | -- |
| 73.47 | 0.402 | 10.7 | -0.487 | 2.16 | -- | -0.0903 | -- | 0.0426 | 17 | -- | -- | -- | -- |
| 73.49 | 0.401 | 10.7 | -0.487 | 2.16 | -- | -- | -- | 0.0422 | 17 | -- | -- | -- | -- |
| 313.41 | 0.825 | 10.7 | -0.467 | -- | 1.23 | -- | -- | 0.0137 | -- | 16.51 | 104 | -- | -- |
| 65.23 | 0.376 | 10.7 | -- | 2.34 | 0.925 | -- | -- | 0.263 | 16.7 | 26 | 3 | -- | -- |
| 318.48 | 0.834 | 10.7 | -0.566 | -- | -- | -- | -- | -0.0131 | -- | -- | -- | -- | -- |
| 79.75 | 0.418 | 10.7 | -- | 2.17 | -- | -- | -- | 0.0964 | 17 | -- | -- | -- | -- |
| 290.28 | 0.794 | 10.7 | -- | -- | -1.52 | -- | -- | -0.12 | -- | 35.3 | 255 | -- | -- |
| 326.91 | 0.844 | 10.7 | -- | -- | -- | -- | -- | 0.0496 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.19 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 15 |
| 14 | 56.05 | temperature | 15.0 | 270 | > th | dose independent | rect. | 17 | 16 |
| 15 | 56.13 | temperature | 15.0 | 270 | > th | dose independent | rect. | 15 | 7 |
| 19 | 56.56 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 16 | 6 |
| 26 | 56.93 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 21 | 7 |
| 32 | 57.47 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 15 | 7 |
| 60 | 58.23 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 21 | 7 |
| 65 | 58.32 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 21 | 19 |
| 67 | 58.38 | temperature | 10.0 | 10 | > th | dose dependent | sin | 9 | NA |
| 92 | 58.86 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 22 | 8 |
| 93 | 58.87 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 20 | 21 |
| 139 | 59.62 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 16 | 6 |
| 141 | 59.64 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 17 | 4 |
| 176 | 60.05 | temperature | 30.0 | 10 | < th | dose dependent | sin | 10 | NA |
| 189 | 60.19 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 7 |
| 192 | 60.19 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 7 |
| 210 | 60.31 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 19 |
| 212 | 60.32 | radiation | 40.0 | 270 | < th | dose independent | rect. | 15 | 7 |
| 215 | 60.33 | temperature | 10.0 | 270 | > th | dose independent | rect. | 22 | 17 |
| 229 | 60.44 | wind | 1.0 | 270 | > th | dose independent | rect. | 15 | 7 |
| 232 | 60.47 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 16 | 5 |
| 233 | 60.47 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 16 | 5 |
| 236 | 60.48 | wind | 9.0 | 270 | < th | dose independent | rect. | 22 | 17 |
| 240 | 60.53 | radiation | 30.0 | 270 | < th | dose independent | rect. | 16 | 5 |
| 242 | 60.55 | humidity | 50.0 | 270 | > th | dose independent | rect. | 22 | 17 |
| 245 | 60.56 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 19 |
| 254 | 60.62 | wind | 1.0 | 270 | > th | dose independent | rect. | 16 | 5 |
| 257 | 60.64 | wind | 9.0 | 270 | < th | dose independent | rect. | 21 | 19 |
| 270 | 60.76 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 15 |
| 272 | 60.76 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 15 |
| 280 | 60.81 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 16 | 17 |
| 282 | 60.81 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 16 | 17 |
| 283 | 60.82 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 16 | 5 |
| 285 | 60.82 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 7 |
| 288 | 60.84 | wind | 9.0 | 270 | < th | dose independent | rect. | 16 | 5 |
| 298 | 60.92 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 16 | 5 |
| 301 | 60.96 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 15 | 7 |
| 306 | 60.97 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 23 | 18 |
| 310 | 60.98 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 22 | 17 |
| 312 | 60.98 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 22 | 17 |
| 316 | 61.02 | wind | 1.0 | 270 | > th | dose independent | rect. | 9 | 7 |
| 317 | 61.03 | temperature | 15.0 | 270 | > th | dose independent | rect. | 4 | 17 |
| 322 | 61.04 | temperature | 15.0 | 270 | > th | dose independent | rect. | 3 | 19 |
| 332 | 61.08 | humidity | 90.0 | 270 | < th | dose independent | rect. | 16 | 6 |
| 338 | 61.10 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 19 |
| 339 | 61.10 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 19 |
| 343 | 61.13 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 21 | 7 |
| 351 | 61.16 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 18 | 6 |
| 355 | 61.18 | temperature | 25.0 | 10 | > th | dose independent | rect. | 18 | 17 |
| 376 | 61.30 | radiation | 10.0 | 270 | < th | dose independent | rect. | 17 | 3 |
| 382 | 61.33 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 3 |
| 384 | 61.33 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 3 |
| 399 | 61.38 | temperature | 10.0 | 270 | > th | dose independent | rect. | 20 | 21 |
| 401 | 61.38 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 10 | 14 |
| 403 | 61.39 | wind | 1.0 | 270 | > th | dose independent | rect. | 17 | 3 |
| 410 | 61.40 | wind | 9.0 | 270 | < th | dose independent | rect. | 9 | 7 |
| 424 | 61.43 | temperature | 10.0 | 270 | > th | dose independent | rect. | 9 | 7 |
| 425 | 61.43 | humidity | 50.0 | 270 | > th | dose independent | rect. | 9 | 7 |
| 426 | 61.43 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 9 | 7 |
| 430 | 61.43 | temperature | 10.0 | 720 | > th | dose dependent | sin | 17 | NA |
| 432 | 61.44 | humidity | 90.0 | 270 | < th | dose independent | rect. | 17 | 3 |
| 433 | 61.44 | temperature | 25.0 | 30 | > th | dose independent | rect. | 18 | 15 |
| 445 | 61.48 | temperature | 15.0 | 10 | > th | dose independent | rect. | 18 | 17 |
| 449 | 61.49 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 9 | 7 |
| 451 | 61.49 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 16 | 17 |
| 453 | 61.49 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 17 | 3 |
| 454 | 61.49 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 9 | 7 |
| 459 | 61.51 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 9 | 7 |
| 471 | 61.54 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 3 |
| 484 | 61.58 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 3 |
| 502 | 61.62 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 2 |
| 510 | 61.64 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 16 | 17 |
| 513 | 61.65 | wind | 9.0 | 270 | < th | dose independent | rect. | 16 | 17 |
| 514 | 61.65 | temperature | 25.0 | 10 | < th | dose independent | rect. | 23 | 18 |
| 523 | 61.67 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 3 |
| 536 | 61.70 | temperature | 15.0 | 10 | > th | dose independent | rect. | 17 | 7 |
| 537 | 61.70 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 22 | 17 |
| 539 | 61.71 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 17 | 7 |
| 557 | 61.74 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 16 | 17 |
| 620 | 61.86 | wind | 1.0 | 270 | > th | dose independent | rect. | 22 | 17 |
| 643 | 61.89 | humidity | 90.0 | 720 | < th | dose independent | rect. | 10 | 14 |
| 655 | 61.91 | radiation | 40.0 | 270 | < th | dose independent | rect. | 17 | 15 |
| 658 | 61.92 | humidity | 50.0 | 90 | > th | dose independent | rect. | 17 | 6 |
| 665 | 61.93 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 20 | 21 |
| 673 | 61.93 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 20 | 21 |
| 686 | 61.97 | wind | 1.0 | 270 | > th | dose independent | rect. | 21 | 19 |
| 700 | 61.98 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 21 | 19 |
| 706 | 61.99 | radiation | 30.0 | 270 | < th | dose independent | rect. | 16 | 17 |
| 713 | 62.00 | radiation | 20.0 | 270 | < th | dose independent | rect. | 17 | 15 |
| 735 | 62.03 | radiation | 1.0 | 90 | < th | dose independent | rect. | 22 | 19 |
| 765 | 62.07 | temperature | 15.0 | 270 | > th | dose independent | rect. | 2 | 21 |
| 773 | 62.08 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 12 | 16 |
| 783 | 62.11 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 21 | 6 |
| 816 | 62.18 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 16 |
| 866 | 62.27 | temperature | 25.0 | 30 | < th | dose independent | rect. | 23 | 8 |
| 916 | 62.34 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 14 | 16 |
| 953 | 62.41 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 4 |
| 964 | 62.43 | humidity | 90.0 | 90 | < th | dose independent | rect. | 17 | 16 |