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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0492500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : RWD domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.81 (0.0316) R2 : 0.718
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.57 (0.0815) R2dC : 0.618 R2C : 0.65
β3 : -0.967 (0.095) R2dE : 0.0652 R2E : 0.0941
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.12 (0.0666) R2dN8 : 0.003 R2N8 : 0.00334
σ : 0.594
deviance : 162.6
__
_____
C
peak time of C : 16.2
E
wheather : temperature
threshold : 26.27
memory length : 5335
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
147.74 0.571 5.64 1.7 2.48 -1.55 -0.343 4.32 0.328 16.3 24.85 1227 -- --
155.15 0.58 5.77 0.691 2.66 -1.15 -0.605 -- 0.113 16.3 24.43 6535 -- --
148.01 0.567 5.64 1.71 2.48 -1.58 -- 4.51 0.327 16.4 24.9 1204 -- --
153.27 0.577 5.79 0.641 2.57 -1.13 -- -- -0.0247 16.2 25.67 5359 -- --
466.86 1.01 5.6 1.87 -- -2.13 -- 4.56 0.394 -- 24.32 1217 -- --
197.82 0.659 5.81 0.241 2.63 -- -0.307 -- -0.0912 16.1 -- -- -- --
198.09 0.659 5.81 0.237 2.63 -- -- -- -0.0929 16.1 -- -- -- --
476.64 1.02 5.74 0.654 -- -1.65 -- -- 0.0752 -- 24.37 1220 -- --
162.6 0.594 5.81 -- 2.57 -0.967 -- -- -0.12 16.2 26.27 5335 -- --
574.06 1.12 5.79 0.13 -- -- -- -- -0.163 -- -- -- -- --
199.57 0.661 5.81 -- 2.63 -- -- -- -0.119 16.1 -- -- -- --
487.25 1.03 5.76 -- -- -1.51 -- -- -0.0164 -- 24.4 1217 -- --
574.51 1.12 5.8 -- -- -- -- -- -0.177 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 146.72 wind 9 43200 < th dose independent rect. 19 3
3 147.57 humidity 70 14400 < th dose dependent rect. 18 1
5 148.01 wind 5 43200 > th dose dependent rect. 20 1
6 148.25 humidity 70 14400 < th dose dependent rect. 18 13
19 149.35 humidity 60 14400 < th dose dependent rect. 16 4
32 149.52 wind 9 43200 > th dose independent rect. 19 3
33 149.60 wind 9 43200 > th dose dependent rect. 19 3
38 149.95 humidity 70 14400 < th dose independent rect. 19 13
39 150.14 wind 5 43200 > th dose independent rect. 20 1
40 150.21 temperature 25 4320 > th dose dependent rect. 16 1
43 150.39 humidity 70 14400 < th dose independent rect. 18 3
68 150.67 wind 5 43200 < th dose independent rect. 20 1
79 151.03 temperature 25 1440 > th dose dependent rect. 20 21
81 151.05 temperature 25 1440 > th dose dependent rect. 23 18
101 151.13 temperature 25 1440 > th dose dependent rect. 13 22
102 151.14 temperature 25 4320 > th dose dependent rect. 13 6
113 151.26 radiation 1 43200 < th dose dependent rect. 19 5
115 151.26 temperature 25 1440 > th dose dependent rect. 23 22
123 151.29 temperature 25 1440 > th dose dependent rect. 11 23
134 151.32 temperature 25 1440 > th dose dependent rect. 7 21
148 151.36 temperature 25 1440 > th dose dependent no NA NA
157 151.38 humidity 60 14400 > th dose independent rect. 18 1
177 151.44 temperature 25 1440 > th dose dependent rect. 6 11
200 151.51 temperature 25 1440 > th dose dependent rect. 15 23
211 151.55 humidity 70 14400 > th dose independent rect. 19 13
222 151.57 temperature 25 1440 > th dose dependent rect. 7 14
232 151.59 temperature 25 1440 > th dose dependent sin 22 NA
301 151.74 temperature 25 4320 > th dose dependent sin 19 NA
305 151.75 temperature 10 10 > th dose dependent rect. 2 21
374 151.92 wind 9 43200 > th dose dependent rect. 14 16
425 151.99 wind 9 43200 < th dose independent rect. 17 6
477 152.06 radiation 20 4320 < th dose independent rect. 16 16
545 152.15 radiation 20 4320 > th dose dependent rect. 16 15
597 152.28 temperature 25 4320 > th dose dependent rect. 13 1
622 152.41 wind 9 43200 > th dose independent rect. 17 6
647 152.49 wind 7 43200 > th dose dependent sin 15 NA
661 152.56 wind 9 43200 < th dose independent sin 15 NA
688 152.74 temperature 10 1440 > th dose dependent rect. 7 10
694 152.77 temperature 25 720 > th dose dependent sin 11 NA
705 152.81 wind 9 43200 > th dose independent sin 15 NA
720 152.84 temperature 10 1440 > th dose dependent rect. 7 8
769 153.03 wind 9 43200 > th dose dependent rect. 14 11
789 153.13 humidity 70 14400 > th dose independent rect. 18 9
790 153.13 humidity 70 14400 > th dose independent rect. 18 11
832 153.26 temperature 10 1440 > th dose dependent rect. 11 3
856 153.35 radiation 1 4320 < th dose independent rect. 18 11
877 153.39 radiation 1 4320 < th dose independent rect. 18 9
889 153.42 temperature 15 1440 > th dose dependent rect. 13 1
892 153.43 radiation 1 4320 < th dose independent rect. 18 1
896 153.44 wind 7 43200 > th dose independent rect. 17 21
899 153.45 wind 7 43200 > th dose independent rect. 19 21
925 153.52 wind 7 43200 < th dose independent rect. 19 21
960 153.59 wind 7 43200 > th dose independent rect. 17 23
971 153.61 wind 7 43200 < th dose independent rect. 17 21
976 153.63 temperature 10 1440 > th dose dependent sin 23 NA
988 153.67 wind 9 43200 > th dose independent rect. 14 17
990 153.68 wind 9 43200 < th dose independent rect. 14 17