Os04g0491700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TGF-beta receptor, type I/II extracellular region family protein.
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Os04g0491700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TGF-beta receptor, type I/II extracellular region family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.79 | 0.341 | 11 | 0.689 | 2.2 | 1.72 | 1.36 | -1.04 | 0.531 | 6.28 | 30.07 | 89 | -- | -- |
| 54.02 | 0.342 | 11.1 | 0.528 | 2.2 | 1.73 | 1.24 | -- | 0.495 | 6.31 | 29.62 | 90 | -- | -- |
| 57.05 | 0.352 | 11.1 | 0.693 | 2.22 | 1.74 | -- | -0.857 | 0.519 | 6.24 | 30.65 | 78 | -- | -- |
| 57.59 | 0.353 | 11.1 | 0.531 | 2.2 | 1.73 | -- | -- | 0.479 | 6.25 | 30.23 | 86 | -- | -- |
| 233.87 | 0.712 | 11.1 | 0.928 | -- | 3.75 | -- | 0.0312 | 0.681 | -- | 47.83 | 271 | -- | -- |
| 93.31 | 0.453 | 11.1 | 0.105 | 2.59 | -- | 1.18 | -- | 0.153 | 5.65 | -- | -- | -- | -- |
| 96.68 | 0.46 | 11.1 | 0.11 | 2.6 | -- | -- | -- | 0.148 | 5.6 | -- | -- | -- | -- |
| 233.35 | 0.711 | 11.1 | 0.964 | -- | 3.68 | -- | -- | 0.739 | -- | 33.45 | 284 | -- | -- |
| 64.53 | 0.376 | 11.1 | -- | 2.31 | 1.75 | -- | -- | 0.344 | 6.23 | 42.41 | 66 | -- | -- |
| 447.55 | 0.989 | 11.2 | 0.194 | -- | -- | -- | -- | 0.21 | -- | -- | -- | -- | -- |
| 97 | 0.461 | 11.2 | -- | 2.6 | -- | -- | -- | 0.135 | 5.6 | -- | -- | -- | -- |
| 256.52 | 0.746 | 11.1 | -- | -- | 3.45 | -- | -- | 0.579 | -- | 34.5 | 282 | -- | -- |
| 448.54 | 0.989 | 11.2 | -- | -- | -- | -- | -- | 0.189 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.70 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 21 |
| 3 | 48.97 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 12 | 50.53 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 31 | 51.76 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 37 | 52.21 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 22 |
| 40 | 52.23 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 47 | 52.57 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 50 | 52.81 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 52 | 52.83 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 55 | 52.92 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 22 |
| 77 | 53.39 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 83 | 53.45 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 90 | 53.72 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 94 | 53.74 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 122 | 54.46 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 128 | 54.57 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 149 | 54.99 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 382 | 59.58 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 16 |
| 397 | 59.77 | temperature | 15 | 90 | > th | dose dependent | rect. | 22 | 23 |
| 437 | 60.25 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 467 | 60.72 | temperature | 10 | 10 | > th | dose dependent | sin | 19 | NA |
| 508 | 61.23 | temperature | 30 | 10 | < th | dose dependent | sin | 17 | NA |
| 512 | 61.25 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 592 | 61.87 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 593 | 61.87 | temperature | 15 | 10 | > th | dose dependent | rect. | 20 | 23 |
| 637 | 62.12 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 14 |
| 663 | 62.29 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 670 | 62.32 | temperature | 20 | 90 | > th | dose independent | rect. | 7 | 21 |
| 826 | 63.22 | temperature | 30 | 720 | < th | dose dependent | sin | 21 | NA |
| 870 | 63.49 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 23 |