Os04g0491500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TGF-beta receptor, type I/II extracellular region family protein.
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Os04g0491500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TGF-beta receptor, type I/II extracellular region family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 226.89 | 0.708 | 3.54 | 0.92 | 0.352 | -0.518 | -0.729 | -0.871 | -0.0243 | 20.8 | 70.66 | 281 | -- | -- |
| 228.41 | 0.704 | 3.55 | 0.845 | 0.333 | -0.619 | -0.817 | -- | -0.0432 | 21.7 | 70.68 | 282 | -- | -- |
| 228.48 | 0.704 | 3.54 | 0.965 | 0.374 | -0.461 | -- | -0.906 | -0.0221 | 20.3 | 72 | 271 | -- | -- |
| 230.51 | 0.707 | 3.55 | 0.901 | 0.365 | -0.522 | -- | -- | -0.0372 | 20.5 | 71 | 282 | -- | -- |
| 234.25 | 0.713 | 3.53 | 0.954 | -- | -0.583 | -- | -0.842 | -0.0276 | -- | 73.68 | 339 | -- | -- |
| 237.86 | 0.723 | 3.55 | 0.96 | 0.637 | -- | 0.118 | -- | -0.00636 | 18.2 | -- | -- | -- | -- |
| 237.89 | 0.722 | 3.55 | 0.958 | 0.638 | -- | -- | -- | -0.00612 | 18.3 | -- | -- | -- | -- |
| 236.54 | 0.716 | 3.54 | 0.895 | -- | -0.632 | -- | -- | -0.0455 | -- | 72.44 | 349 | -- | -- |
| 251.27 | 0.738 | 3.57 | -- | 0.339 | -0.619 | -- | -- | -0.142 | 21.3 | 70.76 | 285 | -- | -- |
| 259.01 | 0.752 | 3.53 | 0.941 | -- | -- | -- | -- | -0.0199 | -- | -- | -- | -- | -- |
| 262.1 | 0.757 | 3.57 | -- | 0.625 | -- | -- | -- | -0.113 | 18.4 | -- | -- | -- | -- |
| 257.27 | 0.747 | 3.56 | -- | -- | -0.697 | -- | -- | -0.15 | -- | 70.15 | 342 | -- | -- |
| 282.39 | 0.784 | 3.56 | -- | -- | -- | -- | -- | -0.124 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 217.73 | humidity | 70 | 270 | > th | dose independent | rect. | 7 | 6 |
| 2 | 218.21 | humidity | 70 | 270 | > th | dose independent | rect. | 8 | 3 |
| 8 | 219.36 | humidity | 80 | 720 | < th | dose dependent | rect. | 3 | 6 |
| 13 | 219.82 | humidity | 70 | 720 | > th | dose independent | rect. | 24 | 10 |
| 15 | 219.86 | humidity | 80 | 720 | < th | dose dependent | rect. | 6 | 2 |
| 26 | 220.75 | humidity | 70 | 270 | < th | dose independent | rect. | 6 | 10 |
| 43 | 221.06 | humidity | 70 | 270 | > th | dose independent | rect. | 18 | 19 |
| 64 | 221.41 | wind | 3 | 270 | > th | dose dependent | rect. | 12 | 2 |
| 65 | 221.54 | humidity | 70 | 270 | < th | dose independent | sin | 4 | NA |
| 83 | 222.14 | wind | 7 | 30 | > th | dose dependent | rect. | 17 | 1 |
| 88 | 222.25 | wind | 5 | 270 | > th | dose independent | rect. | 12 | 2 |
| 90 | 222.29 | wind | 3 | 30 | > th | dose dependent | rect. | 12 | 6 |
| 104 | 222.37 | humidity | 70 | 720 | < th | dose independent | rect. | 6 | 4 |
| 121 | 222.44 | humidity | 60 | 270 | > th | dose dependent | rect. | 7 | 6 |
| 124 | 222.51 | humidity | 70 | 270 | > th | dose independent | sin | 5 | NA |
| 134 | 222.61 | wind | 3 | 90 | > th | dose independent | rect. | 8 | 17 |
| 167 | 222.90 | wind | 3 | 90 | > th | dose independent | sin | 21 | NA |
| 190 | 223.17 | temperature | 30 | 90 | < th | dose independent | rect. | 19 | 17 |
| 195 | 223.24 | humidity | 60 | 270 | > th | dose dependent | rect. | 8 | 1 |
| 233 | 223.69 | wind | 3 | 90 | > th | dose independent | rect. | 8 | 13 |
| 236 | 223.71 | wind | 7 | 30 | > th | dose independent | rect. | 17 | 2 |
| 237 | 223.71 | wind | 3 | 90 | > th | dose independent | rect. | 8 | 11 |
| 239 | 223.73 | wind | 7 | 720 | > th | dose independent | rect. | 8 | 1 |
| 242 | 223.74 | temperature | 30 | 270 | < th | dose independent | rect. | 4 | 8 |
| 261 | 223.88 | radiation | 30 | 30 | > th | dose independent | rect. | 15 | 17 |
| 264 | 223.92 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 5 |
| 268 | 223.98 | radiation | 30 | 30 | > th | dose dependent | rect. | 15 | 17 |
| 284 | 224.09 | wind | 3 | 30 | > th | dose independent | rect. | 12 | 6 |
| 304 | 224.23 | temperature | 30 | 270 | < th | dose independent | rect. | 1 | 11 |
| 324 | 224.29 | humidity | 80 | 270 | < th | dose dependent | rect. | 3 | 12 |
| 328 | 224.31 | wind | 3 | 90 | > th | dose independent | rect. | 6 | 12 |
| 330 | 224.32 | wind | 7 | 720 | > th | dose independent | rect. | 1 | 8 |
| 338 | 224.38 | wind | 5 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 355 | 224.49 | radiation | 30 | 30 | > th | dose independent | rect. | 15 | 1 |
| 374 | 224.50 | wind | 5 | 90 | > th | dose independent | rect. | 12 | 23 |
| 398 | 224.54 | wind | 7 | 30 | > th | dose dependent | rect. | 14 | 5 |
| 401 | 224.55 | wind | 1 | 90 | > th | dose dependent | rect. | 3 | 15 |
| 425 | 224.67 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 3 |
| 430 | 224.68 | radiation | 30 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 435 | 224.69 | humidity | 70 | 270 | > th | dose independent | rect. | 1 | 12 |
| 457 | 224.78 | radiation | 20 | 270 | < th | dose independent | rect. | 7 | 6 |
| 462 | 224.79 | wind | 5 | 90 | > th | dose dependent | rect. | 12 | 22 |
| 498 | 224.90 | atmosphere | 1010 | 30 | < th | dose independent | rect. | 20 | 16 |
| 512 | 224.94 | radiation | 30 | 30 | > th | dose dependent | rect. | 15 | 1 |
| 543 | 225.01 | wind | 3 | 90 | < th | dose independent | rect. | 12 | 11 |
| 560 | 225.08 | humidity | 80 | 270 | < th | dose dependent | sin | 4 | NA |
| 571 | 225.14 | temperature | 30 | 10 | < th | dose independent | rect. | 8 | 6 |
| 583 | 225.18 | radiation | 20 | 270 | < th | dose independent | rect. | 8 | 1 |
| 591 | 225.20 | radiation | 40 | 270 | < th | dose dependent | rect. | 7 | 6 |
| 619 | 225.28 | radiation | 40 | 270 | < th | dose dependent | rect. | 7 | 4 |
| 625 | 225.31 | temperature | 30 | 270 | < th | dose independent | rect. | 22 | 14 |
| 699 | 225.53 | wind | 3 | 10 | > th | dose dependent | rect. | 13 | 3 |
| 714 | 225.60 | radiation | 10 | 43200 | < th | dose dependent | rect. | 19 | 9 |
| 796 | 225.84 | temperature | 30 | 270 | < th | dose independent | sin | 7 | NA |
| 805 | 225.86 | wind | 1 | 90 | > th | dose dependent | sin | 21 | NA |
| 820 | 225.90 | humidity | 70 | 270 | > th | dose independent | rect. | 7 | 23 |
| 834 | 225.93 | humidity | 50 | 720 | > th | dose dependent | rect. | 24 | 10 |
| 847 | 225.97 | wind | 1 | 90 | > th | dose dependent | rect. | 8 | 11 |
| 849 | 225.98 | radiation | 20 | 270 | < th | dose independent | rect. | 18 | 19 |
| 892 | 226.10 | wind | 5 | 90 | < th | dose dependent | rect. | 13 | 10 |
| 905 | 226.12 | wind | 3 | 90 | < th | dose dependent | rect. | 11 | 12 |