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Os04g0491200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : TGF-beta receptor, type I/II extracellular region family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.59 (0.0211) R2 : 0.661
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.03 (0.0534) R2dC : 0.275 R2C : 0.285
β3 : -1.65 (0.103) R2dE : 0.214 R2E : 0.283
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.442 (0.0459) R2dN8 : 0.0911 R2N8 : 0.148
σ : 0.393
deviance : 71.1
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_____
C
peak time of C : 3.94
E
wheather : temperature
threshold : 22.9
memory length : 724
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
63.7 0.375 7.57 0.602 1.04 -1.45 -0.0666 -0.275 0.526 3.82 22.95 648 -- --
63.77 0.372 7.57 0.571 1.03 -1.38 -0.0594 -- 0.528 3.83 22.96 694 -- --
63.7 0.372 7.57 0.598 1.03 -1.45 -- -0.256 0.524 3.83 22.92 674 -- --
63.77 0.372 7.58 0.567 1.03 -1.4 -- -- 0.52 3.82 22.96 697 -- --
115.56 0.501 7.61 0.503 -- -1.48 -- 0.108 0.447 -- 25 1048 -- --
88.15 0.44 7.53 0.925 1.04 -- -0.0546 -- 0.738 3.29 -- -- -- --
88.16 0.44 7.53 0.926 1.04 -- -- -- 0.739 3.29 -- -- -- --
115.56 0.501 7.6 0.522 -- -1.51 -- -- 0.446 -- 24.93 1046 -- --
71.1 0.393 7.59 -- 1.03 -1.65 -- -- 0.442 3.94 22.9 724 -- --
149.8 0.572 7.53 0.971 -- -- -- -- 0.766 -- -- -- -- --
110.78 0.492 7.55 -- 1.06 -- -- -- 0.636 3.29 -- -- -- --
121.34 0.513 7.6 -- -- -1.94 -- -- 0.421 -- 22.88 1052 -- --
174.66 0.617 7.55 -- -- -- -- -- 0.658 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 60.45 wind 3.0 43200 < th dose dependent rect. 5 1
3 61.47 atmosphere 995.0 43200 < th dose independent rect. 24 14
4 61.50 atmosphere 995.0 43200 > th dose independent rect. 1 13
9 61.68 atmosphere 995.0 43200 > th dose independent rect. 2 11
10 61.68 atmosphere 995.0 43200 < th dose dependent rect. 11 22
16 61.75 atmosphere 995.0 43200 < th dose dependent rect. 10 19
24 61.86 atmosphere 995.0 43200 < th dose dependent sin 7 NA
25 61.87 humidity 70.0 14400 > th dose dependent rect. 5 1
32 61.93 humidity 50.0 14400 > th dose dependent rect. 2 5
36 61.97 atmosphere 995.0 43200 < th dose independent rect. 3 8
40 61.99 wind 3.0 14400 < th dose dependent rect. 23 3
41 61.99 atmosphere 995.0 43200 < th dose dependent rect. 21 14
80 62.21 atmosphere 995.0 43200 < th dose dependent rect. 11 15
92 62.25 atmosphere 995.0 43200 > th dose independent rect. 4 6
110 62.33 atmosphere 995.0 43200 > th dose independent rect. 5 4
117 62.36 atmosphere 995.0 43200 < th dose independent rect. 4 6
140 62.46 atmosphere 995.0 43200 < th dose independent sin 5 NA
157 62.51 atmosphere 995.0 43200 < th dose dependent no NA NA
177 62.58 atmosphere 995.0 43200 < th dose dependent rect. 2 7
181 62.63 atmosphere 995.0 43200 < th dose dependent sin 17 NA
207 62.73 atmosphere 995.0 43200 < th dose independent rect. 5 3
241 62.93 wind 3.0 43200 < th dose dependent rect. 1 1
256 63.01 atmosphere 995.0 43200 < th dose dependent rect. 12 13
279 63.16 wind 1.0 43200 > th dose dependent rect. 22 1
282 63.19 atmosphere 995.0 43200 > th dose independent rect. 6 2
296 63.25 wind 3.0 43200 < th dose independent rect. 22 2
298 63.26 wind 9.0 43200 > th dose independent rect. 9 5
330 63.43 atmosphere 995.0 43200 > th dose independent sin 4 NA
338 63.48 wind 1.0 14400 > th dose dependent rect. 22 4
340 63.50 wind 3.0 43200 > th dose independent rect. 21 3
346 63.52 wind 9.0 43200 > th dose dependent rect. 10 8
347 63.53 wind 9.0 43200 < th dose independent rect. 21 3
352 63.57 wind 9.0 14400 < th dose dependent rect. 1 1
354 63.59 atmosphere 995.0 43200 < th dose dependent rect. 4 4
362 63.63 wind 3.0 43200 < th dose dependent rect. 20 12
366 63.69 wind 1.0 43200 > th dose dependent rect. 5 1
373 63.74 wind 9.0 43200 < th dose independent rect. 9 5
381 63.79 wind 9.0 43200 > th dose independent rect. 10 3
386 63.81 wind 3.0 43200 < th dose independent rect. 6 1
393 63.86 wind 9.0 14400 < th dose independent rect. 6 5
396 63.86 humidity 80.0 14400 > th dose dependent rect. 13 1
398 63.87 wind 9.0 14400 < th dose independent rect. 9 2
410 63.91 wind 9.0 43200 > th dose independent rect. 21 3
420 63.94 wind 3.0 43200 > th dose dependent rect. 8 1
431 64.00 wind 9.0 43200 > th dose independent rect. 1 17
439 64.02 wind 9.0 43200 > th dose independent rect. 4 14
449 64.04 wind 9.0 43200 > th dose independent rect. 6 12
454 64.05 wind 9.0 43200 > th dose independent rect. 21 21
474 64.10 wind 3.0 43200 > th dose independent rect. 6 1
476 64.10 wind 9.0 43200 > th dose independent rect. 23 19
487 64.13 humidity 90.0 14400 > th dose dependent rect. 7 1
504 64.18 wind 5.0 43200 > th dose independent rect. 8 1
505 64.18 wind 5.0 43200 < th dose independent rect. 8 1
537 64.28 wind 9.0 14400 > th dose independent rect. 7 4
545 64.29 precipitation 0.1 43200 > th dose dependent rect. 6 7
552 64.31 precipitation 0.1 43200 < th dose independent rect. 6 7
560 64.31 precipitation 0.1 43200 < th dose dependent rect. 6 7
565 64.33 wind 1.0 14400 > th dose dependent rect. 1 1
566 64.34 precipitation 0.1 43200 > th dose independent rect. 6 7
590 64.39 wind 9.0 43200 > th dose independent sin 1 NA
593 64.40 wind 3.0 43200 < th dose independent rect. 1 1
594 64.40 wind 3.0 43200 < th dose independent rect. 20 6
603 64.43 wind 9.0 43200 > th dose independent rect. 21 5
610 64.46 wind 9.0 43200 > th dose independent rect. 15 23
618 64.48 wind 9.0 43200 > th dose dependent rect. 10 12
619 64.49 temperature 20.0 14400 < th dose independent rect. 20 1
623 64.49 wind 7.0 43200 > th dose dependent rect. 21 3
644 64.53 wind 9.0 43200 > th dose dependent rect. 10 4
653 64.55 wind 1.0 43200 < th dose dependent rect. 12 1
657 64.56 wind 3.0 43200 > th dose independent rect. 1 1
660 64.56 wind 9.0 43200 < th dose independent rect. 21 21
677 64.60 wind 3.0 43200 > th dose independent rect. 20 6
694 64.63 wind 9.0 43200 < th dose independent rect. 23 19
698 64.64 wind 9.0 43200 < th dose independent rect. 1 17
705 64.66 wind 5.0 43200 < th dose independent rect. 22 5
708 64.66 wind 9.0 43200 < th dose independent rect. 6 12
719 64.69 wind 9.0 43200 < th dose independent rect. 6 10
733 64.71 wind 9.0 43200 < th dose independent rect. 4 14
737 64.72 wind 5.0 43200 > th dose independent rect. 22 5
754 64.73 wind 9.0 43200 > th dose dependent rect. 10 14
755 64.74 wind 9.0 43200 < th dose independent sin 2 NA
766 64.75 wind 9.0 43200 > th dose dependent sin 19 NA
789 64.77 wind 9.0 43200 > th dose dependent rect. 10 16
791 64.77 wind 9.0 43200 > th dose dependent rect. 10 19
827 64.81 wind 9.0 43200 < th dose independent rect. 15 23
845 64.83 temperature 20.0 14400 > th dose independent rect. 20 1
851 64.83 humidity 80.0 14400 > th dose dependent rect. 10 5
857 64.84 wind 3.0 43200 < th dose dependent sin 10 NA
878 64.86 wind 1.0 14400 > th dose dependent rect. 21 10
923 64.92 wind 5.0 43200 > th dose dependent rect. 21 12
980 65.01 wind 9.0 43200 > th dose independent rect. 1 23