Os04g0491100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NB-ARC domain containing protein.
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Os04g0491100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : NB-ARC domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 219.32 | 0.696 | 4.03 | 2.14 | 1.76 | -1.14 | 2.41 | -0.552 | 0.478 | 0.0128 | 81.08 | 1417 | -- | -- |
| 219.74 | 0.69 | 4.03 | 2.19 | 1.76 | -1.17 | 2.46 | -- | 0.486 | 24 | 81.01 | 1405 | -- | -- |
| 244.11 | 0.728 | 4.04 | 2 | 1.71 | -1.04 | -- | -0.752 | 0.461 | 0.0408 | 82 | 1470 | -- | -- |
| 244.63 | 0.728 | 4.04 | 2.07 | 1.75 | -1.12 | -- | -- | 0.456 | 0.0915 | 81.24 | 1405 | -- | -- |
| 326.6 | 0.846 | 4.01 | 1.98 | -- | -2.02 | -- | -2.46 | 0.47 | -- | 86 | 1629 | -- | -- |
| 254.56 | 0.748 | 4.02 | 1.99 | 1.7 | -- | 2.21 | -- | 0.531 | 23.9 | -- | -- | -- | -- |
| 275.73 | 0.778 | 4.02 | 1.9 | 1.69 | -- | -- | -- | 0.521 | 24 | -- | -- | -- | -- |
| 337.68 | 0.86 | 4 | 1.99 | -- | -2.09 | -- | -- | 0.468 | -- | 86 | 1629 | -- | -- |
| 348.8 | 0.87 | 4.06 | -- | 1.66 | -0.933 | -- | -- | 0.338 | 23.9 | 94.01 | 1576 | -- | -- |
| 456.36 | 0.998 | 3.98 | 1.95 | -- | -- | -- | -- | 0.544 | -- | -- | -- | -- | -- |
| 370.71 | 0.901 | 4.07 | -- | 1.72 | -- | -- | -- | 0.309 | 0.049 | -- | -- | -- | -- |
| 426.31 | 0.965 | 4.03 | -- | -- | -2.22 | -- | -- | 0.344 | -- | 102.6 | 1642 | -- | -- |
| 556.74 | 1.1 | 4.03 | -- | -- | -- | -- | -- | 0.328 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 209.82 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 5 |
| 10 | 211.84 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 11 | 211.93 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 12 | 211.93 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 15 | 212.20 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 21 | 212.46 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 13 | 5 |
| 24 | 212.58 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 13 | 5 |
| 25 | 212.58 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 13 | 5 |
| 38 | 213.30 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 7 | 11 |
| 39 | 213.30 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 7 | 11 |
| 47 | 213.50 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 7 | 11 |
| 52 | 213.57 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 5 | 13 |
| 53 | 213.60 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 5 | 13 |
| 54 | 213.60 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 5 | 13 |
| 77 | 214.36 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 83 | 214.72 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 87 | 214.76 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 10 | 11 |
| 100 | 215.07 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 10 | 11 |
| 161 | 216.07 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 9 | 12 |
| 169 | 216.18 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 17 | 2 |
| 200 | 216.56 | humidity | 70.0 | 1440 | > th | dose independent | sin | 15 | NA |
| 239 | 216.84 | humidity | 80.0 | 1440 | < th | dose dependent | sin | 19 | NA |
| 256 | 216.95 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 265 | 217.00 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 21 | NA |
| 301 | 217.26 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 311 | 217.33 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 15 | 17 |
| 321 | 217.38 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 15 | 6 |
| 323 | 217.38 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 15 | 15 |
| 326 | 217.39 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 12 | 9 |
| 327 | 217.39 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 15 | 9 |
| 331 | 217.40 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 12 | 12 |
| 332 | 217.40 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 12 | 18 |
| 364 | 217.49 | humidity | 50.0 | 1440 | > th | dose dependent | sin | 21 | NA |
| 403 | 217.72 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 12 | 10 |
| 544 | 218.40 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 17 |
| 547 | 218.41 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 12 | 14 |
| 607 | 218.62 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 647 | 218.78 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 9 |
| 662 | 218.82 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 15 | 4 |
| 688 | 218.93 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 15 | 6 |
| 769 | 219.21 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 9 | 18 |
| 847 | 219.47 | humidity | 80.0 | 1440 | < th | dose dependent | no | NA | NA |
| 875 | 219.56 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 877 | 219.57 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 15 | 1 |
| 881 | 219.59 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 952 | 219.84 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 10 | 12 |
| 964 | 219.87 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 10 | 12 |
| 969 | 219.87 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 10 | 12 |
| 971 | 219.88 | humidity | 70.0 | 1440 | < th | dose independent | sin | 15 | NA |
| 975 | 219.89 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 17 | 1 |