Os04g0490500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pto kinase interactor 1.
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Os04g0490500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pto kinase interactor 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68.53 | 0.389 | 10.9 | 0.787 | 1.36 | -0.761 | -0.62 | 1.29 | 0.396 | 15.6 | 4.019 | 1249 | -- | -- |
| 70.92 | 0.392 | 10.9 | 0.734 | 1.32 | -0.691 | -0.855 | -- | 0.371 | 15.3 | 15.44 | 1322 | -- | -- |
| 69.52 | 0.388 | 10.9 | 0.788 | 1.38 | -0.755 | -- | 1.49 | 0.386 | 15.8 | 2.118 | 1218 | -- | -- |
| 72.83 | 0.397 | 10.9 | 0.643 | 1.33 | -0.633 | -- | -- | 0.331 | 15.4 | 15.8 | 1322 | -- | -- |
| 169.76 | 0.607 | 10.9 | 0.801 | -- | -0.966 | -- | 1.29 | 0.446 | -- | 13.67 | 1267 | -- | -- |
| 86.59 | 0.436 | 11 | 0.551 | 1.43 | -- | -0.792 | -- | 0.19 | 15.1 | -- | -- | -- | -- |
| 88.61 | 0.441 | 11 | 0.534 | 1.43 | -- | -- | -- | 0.185 | 15.2 | -- | -- | -- | -- |
| 171.57 | 0.61 | 10.9 | 0.634 | -- | -0.914 | -- | -- | 0.365 | -- | 13.26 | 1294 | -- | -- |
| 83.29 | 0.425 | 11 | -- | 1.35 | -0.576 | -- | -- | 0.249 | 15.5 | 16.83 | 1261 | -- | -- |
| 204.93 | 0.669 | 11 | 0.473 | -- | -- | -- | -- | 0.148 | -- | -- | -- | -- | -- |
| 96.13 | 0.459 | 11 | -- | 1.42 | -- | -- | -- | 0.126 | 15.2 | -- | -- | -- | -- |
| 181.98 | 0.628 | 11 | -- | -- | -0.821 | -- | -- | 0.256 | -- | 24.01 | 1272 | -- | -- |
| 210.84 | 0.678 | 11 | -- | -- | -- | -- | -- | 0.0955 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 68.03 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 16 | 20 |
| 3 | 68.22 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 7 | 5 |
| 4 | 68.30 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 8 | 3 |
| 8 | 68.38 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 23 | 13 |
| 12 | 68.40 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 2 | 10 |
| 25 | 68.58 | radiation | 30.0 | 1440 | < th | dose dependent | rect. | 8 | 2 |
| 26 | 68.60 | radiation | 20.0 | 1440 | < th | dose independent | sin | 8 | NA |
| 29 | 68.60 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 7 | 5 |
| 40 | 68.75 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 67 | 68.82 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 23 | 13 |
| 90 | 68.86 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 3 | 9 |
| 139 | 68.95 | radiation | 1.0 | 1440 | > th | dose dependent | sin | 8 | NA |
| 140 | 68.95 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 6 | 6 |
| 146 | 68.96 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 17 | 19 |
| 155 | 69.00 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 7 | 4 |
| 213 | 69.10 | radiation | 40.0 | 1440 | < th | dose dependent | sin | 7 | NA |
| 336 | 69.44 | humidity | 70.0 | 720 | > th | dose independent | rect. | 17 | 7 |
| 374 | 69.52 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 484 | 69.68 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 15 | 3 |
| 530 | 69.78 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 4 |
| 562 | 69.91 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 5 |
| 575 | 70.01 | wind | 9.0 | 43200 | > th | dose independent | rect. | 15 | 3 |
| 591 | 70.09 | wind | 9.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 626 | 70.18 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 7 | 10 |
| 629 | 70.19 | humidity | 70.0 | 720 | > th | dose independent | sin | 10 | NA |
| 632 | 70.20 | wind | 9.0 | 43200 | < th | dose independent | rect. | 15 | 3 |
| 635 | 70.20 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 17 | 20 |
| 636 | 70.20 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 7 | 21 |
| 639 | 70.21 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 7 | 18 |
| 643 | 70.22 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 644 | 70.22 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 652 | 70.23 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 23 | 18 |
| 657 | 70.24 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 5 |
| 732 | 70.28 | radiation | 20.0 | 1440 | < th | dose independent | no | NA | NA |
| 733 | 70.28 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 757 | 70.28 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 2 |
| 796 | 70.31 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 17 | 20 |
| 816 | 70.33 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 985 | 70.47 | wind | 7.0 | 43200 | > th | dose independent | rect. | 17 | 21 |