Os04g0489900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0489900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.56 | 0.327 | 8.11 | 1.84 | 0.556 | 0.814 | -0.0531 | -2.08 | -0.0739 | 21.1 | 24.44 | 454 | -- | -- |
| 53.59 | 0.341 | 8.13 | 1.6 | 0.468 | 1.3 | 0.179 | -- | -0.12 | 21 | 22.53 | 1525 | -- | -- |
| 48.56 | 0.325 | 8.11 | 1.83 | 0.551 | 0.82 | -- | -2.06 | -0.0759 | 21 | 24.43 | 433 | -- | -- |
| 53.66 | 0.341 | 8.14 | 1.62 | 0.467 | 1.32 | -- | -- | -0.127 | 21.4 | 22.01 | 1426 | -- | -- |
| 61.77 | 0.366 | 8.11 | 1.66 | -- | 0.954 | -- | -1.28 | -0.132 | -- | 24 | 31 | -- | -- |
| 68.91 | 0.389 | 8.19 | 1.26 | 0.481 | -- | 0.258 | -- | -0.331 | 21.3 | -- | -- | -- | -- |
| 69.14 | 0.389 | 8.19 | 1.25 | 0.479 | -- | -- | -- | -0.331 | 21.4 | -- | -- | -- | -- |
| 64.34 | 0.374 | 8.14 | 1.49 | -- | 1.11 | -- | -- | -0.168 | -- | 23.7 | 38 | -- | -- |
| 107.42 | 0.483 | 8.21 | -- | 0.502 | 0.429 | -- | -- | -0.409 | 21.4 | 23.72 | 356 | -- | -- |
| 82.6 | 0.425 | 8.18 | 1.25 | -- | -- | -- | -- | -0.333 | -- | -- | -- | -- | -- |
| 110.03 | 0.491 | 8.22 | -- | 0.481 | -- | -- | -- | -0.47 | 21.6 | -- | -- | -- | -- |
| 118.09 | 0.508 | 8.19 | -- | -- | 0.602 | -- | -- | -0.403 | -- | 23.3 | 3 | -- | -- |
| 123.7 | 0.519 | 8.21 | -- | -- | -- | -- | -- | -0.471 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.61 | humidity | 50 | 43200 | < th | dose independent | rect. | 16 | 5 |
| 8 | 47.64 | humidity | 50 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 9 | 47.66 | humidity | 50 | 43200 | > th | dose independent | rect. | 16 | 5 |
| 10 | 47.67 | humidity | 50 | 43200 | > th | dose independent | rect. | 16 | 3 |
| 23 | 47.83 | humidity | 50 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 31 | 48.23 | humidity | 60 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 33 | 48.37 | humidity | 50 | 14400 | < th | dose dependent | rect. | 11 | 2 |
| 35 | 48.41 | humidity | 60 | 43200 | < th | dose dependent | rect. | 16 | 7 |
| 40 | 48.42 | humidity | 60 | 43200 | < th | dose dependent | rect. | 16 | 5 |
| 49 | 48.56 | humidity | 60 | 43200 | > th | dose independent | rect. | 18 | 20 |
| 55 | 48.60 | humidity | 70 | 43200 | < th | dose dependent | rect. | 19 | 20 |
| 73 | 48.67 | humidity | 70 | 43200 | < th | dose dependent | rect. | 5 | 9 |
| 84 | 48.70 | humidity | 70 | 43200 | < th | dose dependent | rect. | 11 | 2 |
| 106 | 48.76 | humidity | 70 | 43200 | < th | dose dependent | sin | 4 | NA |
| 116 | 48.79 | temperature | 25 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 121 | 48.82 | humidity | 60 | 43200 | < th | dose independent | rect. | 18 | 20 |
| 139 | 48.87 | wind | 7 | 43200 | < th | dose independent | rect. | 23 | 2 |
| 148 | 48.88 | temperature | 25 | 270 | < th | dose dependent | rect. | 4 | 23 |
| 155 | 48.89 | humidity | 80 | 43200 | < th | dose dependent | rect. | 18 | 14 |
| 162 | 48.90 | humidity | 80 | 43200 | < th | dose dependent | rect. | 19 | 5 |
| 167 | 48.91 | humidity | 50 | 43200 | < th | dose dependent | rect. | 19 | 20 |
| 168 | 48.92 | wind | 7 | 43200 | > th | dose dependent | rect. | 21 | 4 |
| 175 | 48.94 | humidity | 80 | 43200 | < th | dose dependent | sin | 10 | NA |
| 183 | 48.96 | wind | 7 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 196 | 48.97 | humidity | 50 | 43200 | < th | dose dependent | rect. | 4 | 11 |
| 208 | 48.98 | humidity | 70 | 43200 | < th | dose dependent | rect. | 10 | 23 |
| 212 | 48.99 | humidity | 70 | 43200 | < th | dose dependent | no | NA | NA |
| 215 | 48.99 | humidity | 70 | 43200 | < th | dose dependent | rect. | 3 | 23 |
| 216 | 49.00 | humidity | 80 | 43200 | < th | dose dependent | sin | 7 | NA |
| 236 | 49.03 | humidity | 70 | 43200 | < th | dose independent | sin | 8 | NA |
| 238 | 49.03 | wind | 7 | 43200 | > th | dose independent | rect. | 21 | 4 |
| 287 | 49.06 | humidity | 70 | 43200 | < th | dose dependent | rect. | 12 | 23 |
| 297 | 49.08 | humidity | 70 | 43200 | > th | dose independent | sin | 9 | NA |
| 298 | 49.08 | humidity | 70 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 313 | 49.09 | wind | 5 | 43200 | > th | dose dependent | rect. | 23 | 2 |
| 338 | 49.11 | humidity | 80 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 398 | 49.16 | humidity | 60 | 43200 | > th | dose independent | sin | 6 | NA |
| 401 | 49.16 | humidity | 50 | 43200 | < th | dose dependent | sin | 6 | NA |
| 410 | 49.16 | temperature | 25 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 414 | 49.17 | humidity | 50 | 43200 | < th | dose dependent | rect. | 10 | 5 |
| 474 | 49.22 | temperature | 20 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 477 | 49.22 | wind | 9 | 43200 | > th | dose dependent | rect. | 13 | 19 |
| 537 | 49.29 | humidity | 70 | 43200 | > th | dose independent | rect. | 19 | 4 |
| 556 | 49.31 | wind | 9 | 43200 | > th | dose independent | rect. | 15 | 17 |
| 645 | 49.38 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 697 | 49.41 | temperature | 25 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 700 | 49.42 | humidity | 70 | 43200 | > th | dose independent | rect. | 18 | 14 |
| 712 | 49.43 | wind | 9 | 43200 | > th | dose independent | rect. | 15 | 23 |
| 730 | 49.44 | wind | 9 | 43200 | > th | dose independent | rect. | 13 | 21 |
| 741 | 49.44 | humidity | 50 | 43200 | < th | dose dependent | rect. | 11 | 22 |
| 756 | 49.46 | wind | 9 | 43200 | < th | dose independent | rect. | 15 | 17 |
| 781 | 49.48 | humidity | 50 | 43200 | < th | dose dependent | no | NA | NA |
| 788 | 49.48 | humidity | 50 | 43200 | < th | dose dependent | rect. | 4 | 17 |
| 823 | 49.49 | wind | 9 | 43200 | < th | dose independent | rect. | 15 | 23 |
| 840 | 49.50 | wind | 9 | 43200 | > th | dose dependent | rect. | 15 | 16 |
| 909 | 49.53 | wind | 9 | 43200 | < th | dose independent | rect. | 13 | 21 |
| 910 | 49.53 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 22 |
| 978 | 49.58 | wind | 9 | 43200 | > th | dose dependent | sin | 18 | NA |