Os04g0488700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to PHY3.
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Os04g0488700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to PHY3.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 74.95 | 0.407 | 11.2 | -0.36 | 2.97 | -0.689 | 0.0675 | 0.161 | -0.452 | 6.89 | 39.55 | 1387 | -- | -- |
| 75 | 0.403 | 11.2 | -0.356 | 2.97 | -0.685 | 0.0671 | -- | -0.45 | 6.89 | 39.63 | 1386 | -- | -- |
| 74.97 | 0.403 | 11.2 | -0.36 | 2.97 | -0.689 | -- | 0.163 | -0.452 | 6.89 | 39.54 | 1387 | -- | -- |
| 75.01 | 0.403 | 11.2 | -0.354 | 2.97 | -0.686 | -- | -- | -0.447 | 6.89 | 39.64 | 1386 | -- | -- |
| 532.13 | 1.07 | 11.2 | -0.443 | -- | -0.677 | -- | 0.239 | -0.351 | -- | 50.77 | 1462 | -- | -- |
| 86.35 | 0.436 | 11.1 | -0.315 | 2.97 | -- | 0.0836 | -- | -0.319 | 6.81 | -- | -- | -- | -- |
| 86.36 | 0.435 | 11.1 | -0.313 | 2.97 | -- | -- | -- | -0.32 | 6.81 | -- | -- | -- | -- |
| 532.04 | 1.07 | 11.2 | -0.353 | -- | -0.579 | -- | -- | -0.339 | -- | 50.77 | 1455 | -- | -- |
| 78.16 | 0.412 | 11.2 | -- | 2.97 | -0.666 | -- | -- | -0.421 | 6.86 | 39.64 | 1387 | -- | -- |
| 548.29 | 1.09 | 11.2 | -0.248 | -- | -- | -- | -- | -0.262 | -- | -- | -- | -- | -- |
| 88.95 | 0.441 | 11.1 | -- | 2.97 | -- | -- | -- | -0.285 | 6.81 | -- | -- | -- | -- |
| 534.76 | 1.08 | 11.2 | -- | -- | -0.638 | -- | -- | -0.33 | -- | 49.83 | 1479 | -- | -- |
| 549.9 | 1.09 | 11.2 | -- | -- | -- | -- | -- | -0.235 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 68.54 | temperature | 20.0 | 90 | > th | dose independent | rect. | 21 | 19 |
| 3 | 69.18 | temperature | 20.0 | 10 | > th | dose independent | rect. | 22 | 18 |
| 11 | 70.51 | temperature | 20.0 | 270 | > th | dose independent | rect. | 19 | 6 |
| 12 | 70.51 | temperature | 20.0 | 270 | > th | dose independent | rect. | 11 | 13 |
| 13 | 70.75 | temperature | 20.0 | 90 | > th | dose independent | rect. | 21 | 6 |
| 19 | 71.03 | temperature | 20.0 | 90 | > th | dose independent | rect. | 5 | 23 |
| 24 | 71.18 | temperature | 20.0 | 10 | > th | dose independent | rect. | 22 | 6 |
| 25 | 71.20 | temperature | 20.0 | 720 | > th | dose independent | rect. | 20 | 3 |
| 35 | 71.78 | temperature | 20.0 | 90 | > th | dose independent | rect. | 21 | 12 |
| 52 | 72.22 | temperature | 20.0 | 270 | > th | dose independent | rect. | 19 | 13 |
| 61 | 72.55 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 1 | 5 |
| 65 | 72.59 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 80 | 72.62 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 5 |
| 84 | 72.64 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 20 | 4 |
| 90 | 72.77 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 92 | 72.80 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 21 | 6 |
| 96 | 72.84 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 12 | 21 |
| 102 | 72.89 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 12 | 3 |
| 104 | 72.89 | temperature | 20.0 | 10 | > th | dose independent | rect. | 12 | 16 |
| 105 | 72.89 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 106 | 72.90 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 21 | 2 |
| 109 | 72.91 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 4 | 2 |
| 136 | 73.06 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 12 | 5 |
| 142 | 73.07 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 145 | 73.08 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 12 | 17 |
| 146 | 73.09 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 12 | 14 |
| 149 | 73.10 | wind | 1.0 | 43200 | > th | dose independent | rect. | 2 | 2 |
| 150 | 73.10 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 12 | 12 |
| 190 | 73.27 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 1 | 9 |
| 194 | 73.30 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 14 | 19 |
| 199 | 73.34 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 4 | 5 |
| 207 | 73.37 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 22 | 6 |
| 224 | 73.45 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 19 | 12 |
| 225 | 73.46 | temperature | 20.0 | 10 | > th | dose independent | rect. | 22 | 12 |
| 235 | 73.50 | radiation | 30.0 | 1440 | > th | dose dependent | rect. | 12 | 3 |
| 244 | 73.52 | radiation | 40.0 | 1440 | < th | dose independent | sin | 14 | NA |
| 250 | 73.54 | wind | 1.0 | 43200 | > th | dose independent | rect. | 1 | 6 |
| 258 | 73.56 | radiation | 30.0 | 1440 | > th | dose dependent | rect. | 12 | 20 |
| 259 | 73.57 | wind | 1.0 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 267 | 73.60 | wind | 9.0 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 268 | 73.60 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 15 | 2 |
| 290 | 73.61 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 297 | 73.63 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 316 | 73.69 | wind | 1.0 | 43200 | < th | dose independent | rect. | 1 | 6 |
| 322 | 73.70 | radiation | 30.0 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 324 | 73.71 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 351 | 73.76 | wind | 1.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 352 | 73.76 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 355 | 73.76 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 359 | 73.77 | wind | 1.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 362 | 73.78 | wind | 7.0 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 363 | 73.78 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 368 | 73.79 | radiation | 40.0 | 1440 | > th | dose independent | rect. | 12 | 3 |
| 378 | 73.81 | radiation | 40.0 | 1440 | > th | dose independent | rect. | 12 | 21 |
| 391 | 73.85 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 5 |
| 400 | 73.87 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 14 | 3 |
| 438 | 73.92 | radiation | 30.0 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 446 | 73.94 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 14 | 12 |
| 452 | 73.95 | wind | 1.0 | 43200 | < th | dose independent | rect. | 23 | 7 |
| 453 | 73.95 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 14 | 14 |
| 470 | 73.98 | wind | 5.0 | 43200 | < th | dose independent | rect. | 4 | 6 |
| 481 | 74.00 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 516 | 74.07 | wind | 5.0 | 43200 | > th | dose independent | rect. | 4 | 6 |
| 526 | 74.08 | wind | 3.0 | 43200 | > th | dose dependent | sin | 7 | NA |
| 560 | 74.14 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 574 | 74.15 | wind | 5.0 | 43200 | > th | dose independent | rect. | 3 | 10 |
| 580 | 74.16 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 592 | 74.17 | radiation | 30.0 | 1440 | > th | dose dependent | rect. | 14 | 18 |
| 617 | 74.21 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 649 | 74.24 | radiation | 30.0 | 1440 | > th | dose dependent | sin | 14 | NA |
| 700 | 74.31 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 755 | 74.39 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 860 | 74.52 | radiation | 40.0 | 1440 | > th | dose independent | sin | 14 | NA |
| 861 | 74.52 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 874 | 74.54 | radiation | 40.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 899 | 74.56 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 7 |
| 912 | 74.57 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 20 | 10 |