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Os04g0488500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.37 (0.0229) R2 : 0.882
β1 : 1.31 (0.0837) R2dD : 0.0664 R2D : 0.0482
β2 : 2.08 (0.0701) R2dC : 0.339 R2C : 0.628
β3 : -1.54 (0.0679) R2dE : 0.2 R2E : 0.487
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.122 (0.049) R2dN8 : 0.00215 R2N8 : -0.00724
σ : 0.427
deviance : 84.03
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_____
C
peak time of C : 15.6
E
wheather : wind
threshold : 4.864
memory length : 300
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 2.78
open length of G : 2.43

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
81.96 0.425 8.38 1.26 2.08 -1.53 -0.554 -0.993 0.108 15.6 4.867 299 2.87 2.38
84.13 0.427 8.37 1.32 2.12 -1.49 -0.153 -- 0.133 15.7 5.29 299 2.85 2.33
82.65 0.423 8.38 1.26 2.08 -1.53 -- -0.724 0.101 15.6 4.832 301 2.8 2.45
84.03 0.427 8.37 1.31 2.08 -1.54 -- -- 0.122 15.6 4.864 300 2.78 2.43
227.15 0.702 8.35 1.1 -- -2.49 -- -1.27 0.109 -- 31.79 315 2.38 2.15
146.37 0.567 8.43 1.23 3.14 -- 0.424 -- 0.00902 16.5 -- -- -- --
146.85 0.567 8.42 1.23 3.14 -- -- -- 0.0113 16.5 -- -- -- --
193.98 0.649 8.31 1.53 -- -2.74 -- -- 0.453 -- 6.4 377 0.433 4.55
129.04 0.529 8.41 -- 2.1 -1.48 -- -- -0.0262 15.7 5.271 296 2.88 2.43
674.5 1.21 8.4 1.11 -- -- -- -- -0.0715 -- -- -- -- --
186.79 0.639 8.46 -- 3.12 -- -- -- -0.126 16.5 -- -- -- --
230.47 0.707 8.38 -- -- -2.68 -- -- 0.0129 -- 148.2 396 0.0159 4.59
706.94 1.24 8.43 -- -- -- -- -- -0.195 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 84.48 wind 5.0 270 < th dose independent rect. 3 2
2 85.37 wind 5.0 90 < th dose independent rect. 3 5
4 85.53 precipitation 0.1 270 < th dose independent rect. 3 2
5 85.53 precipitation 0.1 270 < th dose dependent rect. 3 2
10 86.58 precipitation 0.1 90 < th dose independent rect. 3 5
11 86.58 precipitation 0.1 90 < th dose dependent rect. 3 5
12 86.60 wind 5.0 270 < th dose independent rect. 1 6
13 86.61 wind 9.0 270 < th dose independent rect. 5 22
16 87.27 temperature 10.0 270 > th dose independent rect. 3 2
18 87.27 temperature 30.0 270 < th dose independent rect. 3 2
19 87.27 humidity 50.0 270 > th dose independent rect. 3 2
22 87.27 atmosphere 995.0 270 > th dose independent rect. 3 2
23 87.27 atmosphere 1010.0 270 < th dose independent rect. 3 2
25 87.27 radiation 20.0 270 < th dose independent rect. 3 2
28 87.27 temperature 10.0 270 > th dose independent rect. 5 22
29 87.29 radiation 1.0 270 < th dose dependent rect. 3 2
32 87.32 wind 9.0 90 < th dose independent rect. 8 19
33 87.32 radiation 40.0 270 < th dose dependent rect. 3 2
38 87.49 radiation 1.0 270 < th dose independent rect. 3 2
43 87.67 temperature 10.0 90 > th dose independent rect. 3 5
45 87.67 temperature 30.0 90 < th dose independent rect. 3 5
46 87.67 humidity 50.0 90 > th dose independent rect. 3 5
48 87.67 atmosphere 995.0 90 > th dose independent rect. 3 5
49 87.67 atmosphere 1015.0 90 < th dose independent rect. 3 5
50 87.67 temperature 10.0 90 > th dose independent rect. 8 19
52 87.82 radiation 40.0 90 < th dose independent rect. 3 5
53 87.88 radiation 20.0 270 < th dose dependent rect. 2 5
56 87.99 precipitation 0.1 90 < th dose independent rect. 8 19
57 87.99 precipitation 0.1 90 < th dose dependent rect. 8 19
84 88.62 radiation 10.0 270 < th dose independent rect. 2 5
87 88.75 wind 9.0 270 < th dose dependent rect. 3 3
93 89.06 wind 9.0 90 < th dose dependent rect. 3 5
146 90.13 precipitation 0.1 270 < th dose independent rect. 6 21
147 90.13 precipitation 0.1 270 < th dose dependent rect. 6 21
175 91.03 atmosphere 995.0 90 > th dose independent rect. 8 19
180 91.18 humidity 50.0 270 > th dose dependent rect. 3 2
210 91.92 wind 1.0 270 > th dose independent rect. 3 2
235 92.72 temperature 10.0 270 > th dose dependent rect. 3 3
256 93.14 wind 1.0 270 > th dose independent rect. 2 4
281 93.46 radiation 1.0 270 < th dose dependent rect. 3 14
285 93.57 wind 1.0 270 > th dose independent rect. 1 6
286 93.59 humidity 50.0 270 > th dose dependent rect. 2 5
288 93.63 temperature 30.0 270 < th dose dependent rect. 3 2
297 93.66 atmosphere 995.0 90 > th dose dependent rect. 3 5
299 93.71 wind 9.0 10 < th dose independent rect. 8 20
324 93.94 temperature 10.0 90 > th dose dependent rect. 3 5
395 94.96 atmosphere 1015.0 270 < th dose independent rect. 11 10
401 95.05 atmosphere 995.0 270 > th dose dependent rect. 3 2
444 95.64 wind 9.0 270 < th dose independent rect. 21 14
451 95.75 temperature 10.0 270 > th dose independent rect. 11 10
452 95.75 temperature 10.0 270 > th dose independent rect. 21 14
453 95.75 atmosphere 995.0 270 > th dose independent rect. 21 14
504 96.39 humidity 50.0 270 > th dose independent rect. 21 14
548 96.86 precipitation 0.1 270 < th dose independent rect. 6 9
550 96.86 precipitation 0.1 270 < th dose dependent rect. 6 9
552 96.87 wind 9.0 270 < th dose independent rect. 6 9
558 96.93 atmosphere 995.0 270 > th dose independent rect. 6 9
560 96.98 radiation 30.0 270 < th dose independent rect. 15 15
563 97.07 temperature 10.0 270 > th dose independent rect. 6 9
564 97.07 atmosphere 1015.0 270 < th dose independent rect. 6 9
565 97.07 temperature 10.0 270 > th dose independent rect. 15 15
613 97.31 precipitation 0.1 270 < th dose independent rect. 2 17
614 97.31 precipitation 0.1 270 < th dose dependent rect. 2 17
639 97.48 wind 7.0 270 < th dose independent rect. 19 7
667 97.63 humidity 60.0 270 > th dose independent rect. 19 7
669 97.64 temperature 10.0 270 > th dose independent rect. 19 7
670 97.64 temperature 30.0 270 < th dose independent rect. 19 7
672 97.64 atmosphere 995.0 270 > th dose independent rect. 19 7
673 97.64 radiation 1.0 270 < th dose independent rect. 19 7
679 97.64 temperature 10.0 270 > th dose independent rect. 2 17
680 97.64 atmosphere 1015.0 270 < th dose independent rect. 2 17
681 97.64 radiation 1.0 270 < th dose dependent rect. 19 7
688 97.69 radiation 40.0 270 < th dose dependent rect. 15 15
721 98.04 precipitation 0.1 270 < th dose independent rect. 15 15
722 98.04 precipitation 0.1 270 < th dose dependent rect. 15 15
727 98.12 wind 9.0 270 < th dose independent rect. 15 15
729 98.15 precipitation 0.1 270 < th dose independent rect. 19 7
730 98.15 precipitation 0.1 270 < th dose dependent rect. 19 7
757 98.38 wind 9.0 1440 < th dose independent rect. 4 5
758 98.38 temperature 10.0 1440 > th dose independent rect. 4 5
761 98.38 humidity 50.0 1440 > th dose independent rect. 4 5
763 98.38 atmosphere 995.0 1440 > th dose independent rect. 4 5
764 98.38 atmosphere 1015.0 1440 < th dose independent rect. 4 5
766 98.38 temperature 10.0 1440 > th dose independent rect. 9 19
778 98.48 wind 1.0 270 > th dose independent rect. 11 10
782 98.52 precipitation 0.1 270 < th dose independent rect. 11 10
783 98.52 precipitation 0.1 270 < th dose dependent rect. 11 10
786 98.63 wind 9.0 90 < th dose dependent rect. 8 19
787 98.64 wind 9.0 270 < th dose independent rect. 11 10
790 98.72 precipitation 0.1 270 < th dose independent rect. 21 14
791 98.72 temperature 30.0 90 < th dose dependent rect. 3 5
792 98.72 precipitation 0.1 270 < th dose dependent rect. 21 14
798 98.79 wind 9.0 270 < th dose independent rect. 2 17
808 98.91 wind 1.0 270 > th dose independent rect. 7 18
847 99.20 humidity 50.0 270 > th dose dependent rect. 19 7
852 99.27 humidity 50.0 270 > th dose dependent rect. 21 4
933 100.00 atmosphere 1015.0 90 < th dose independent rect. 8 19
934 100.00 atmosphere 1015.0 270 < th dose independent rect. 1 20
954 100.11 atmosphere 1015.0 270 < th dose dependent rect. 3 2
986 100.54 precipitation 0.1 90 < th dose independent rect. 8 7
988 100.54 precipitation 0.1 90 < th dose dependent rect. 8 7