Os04g0488200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os04g0488200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 69.68 | 0.392 | 7.66 | 0.186 | 1.68 | -0.703 | 0.415 | 0.609 | -0.173 | 19.9 | 9.993 | 200 | -- | -- |
| 71.32 | 0.393 | 7.67 | 0.166 | 1.66 | -0.715 | 0.654 | -- | -0.174 | 20 | 9.99 | 205 | -- | -- |
| 70.12 | 0.39 | 7.66 | 0.176 | 1.69 | -0.708 | -- | 0.723 | -0.174 | 19.9 | 10 | 199 | -- | -- |
| 72.71 | 0.397 | 7.66 | 0.173 | 1.68 | -0.713 | -- | -- | -0.173 | 19.9 | 9.992 | 199 | -- | -- |
| 91.37 | 0.445 | 7.6 | 0.228 | -- | -2.14 | -- | 2.36 | -0.198 | -- | 5.28 | 762 | -- | -- |
| 81.51 | 0.423 | 7.66 | 0.135 | 1.77 | -- | 0.486 | -- | -0.159 | 18.4 | -- | -- | -- | -- |
| 82.08 | 0.424 | 7.66 | 0.129 | 1.77 | -- | -- | -- | -0.157 | 18.3 | -- | -- | -- | -- |
| 82.45 | 0.423 | 7.64 | 0.107 | -- | -2.22 | -- | -- | -0.253 | -- | 5.026 | 772 | -- | -- |
| 73.32 | 0.399 | 7.67 | -- | 1.68 | -0.706 | -- | -- | -0.193 | 19.9 | 9.99 | 199 | -- | -- |
| 244.39 | 0.73 | 7.62 | 0.0824 | -- | -- | -- | -- | -0.195 | -- | -- | -- | -- | -- |
| 82.52 | 0.425 | 7.66 | -- | 1.77 | -- | -- | -- | -0.172 | 18.3 | -- | -- | -- | -- |
| 81.01 | 0.419 | 7.64 | -- | -- | -2.32 | -- | -- | -0.289 | -- | 2.926 | 790 | -- | -- |
| 244.57 | 0.73 | 7.63 | -- | -- | -- | -- | -- | -0.205 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 67.71 | radiation | 30 | 270 | < th | dose independent | rect. | 9 | 21 |
| 2 | 68.38 | radiation | 40 | 270 | < th | dose dependent | rect. | 9 | 21 |
| 14 | 69.41 | radiation | 10 | 720 | < th | dose independent | rect. | 17 | 17 |
| 17 | 69.54 | radiation | 20 | 720 | < th | dose dependent | rect. | 17 | 18 |
| 27 | 69.85 | radiation | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 32 | 69.94 | radiation | 30 | 10 | < th | dose dependent | sin | 4 | NA |
| 48 | 70.16 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 14 |
| 58 | 70.26 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 14 |
| 62 | 70.31 | temperature | 25 | 4320 | > th | dose dependent | sin | 7 | NA |
| 64 | 70.34 | temperature | 25 | 4320 | > th | dose dependent | rect. | 22 | 14 |
| 80 | 70.42 | temperature | 25 | 4320 | > th | dose independent | sin | 7 | NA |
| 92 | 70.47 | radiation | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 95 | 70.48 | radiation | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 96 | 70.50 | radiation | 10 | 720 | < th | dose independent | sin | 11 | NA |
| 102 | 70.51 | radiation | 30 | 90 | < th | dose dependent | no | NA | NA |
| 105 | 70.52 | radiation | 10 | 270 | < th | dose independent | rect. | 12 | 22 |
| 115 | 70.55 | radiation | 10 | 270 | < th | dose independent | rect. | 21 | 23 |
| 117 | 70.56 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 120 | 70.57 | temperature | 25 | 4320 | < th | dose independent | sin | 7 | NA |
| 124 | 70.59 | radiation | 10 | 270 | < th | dose independent | rect. | 23 | 23 |
| 148 | 70.66 | radiation | 30 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 150 | 70.67 | temperature | 25 | 1440 | > th | dose dependent | sin | 14 | NA |
| 154 | 70.68 | radiation | 30 | 90 | < th | dose dependent | sin | 5 | NA |
| 158 | 70.68 | radiation | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 175 | 70.74 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 8 | 23 |
| 176 | 70.74 | radiation | 30 | 10 | < th | dose dependent | no | NA | NA |
| 191 | 70.77 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 206 | 70.78 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 12 |
| 207 | 70.78 | radiation | 30 | 270 | < th | dose dependent | rect. | 23 | 23 |
| 209 | 70.79 | radiation | 1 | 720 | > th | dose dependent | rect. | 4 | 6 |
| 228 | 70.80 | radiation | 1 | 720 | > th | dose dependent | rect. | 6 | 4 |
| 254 | 70.84 | radiation | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 277 | 70.87 | radiation | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 279 | 70.88 | wind | 1 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 283 | 70.88 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 23 |
| 297 | 70.90 | radiation | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 306 | 70.92 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 23 |
| 307 | 70.92 | radiation | 1 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 321 | 70.94 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 327 | 70.94 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 21 |
| 331 | 70.94 | temperature | 25 | 4320 | > th | dose dependent | rect. | 3 | 23 |
| 393 | 71.00 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 5 |
| 402 | 71.00 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 19 |
| 423 | 71.02 | radiation | 1 | 720 | > th | dose dependent | sin | 8 | NA |
| 429 | 71.02 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 16 |
| 515 | 71.08 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 5 |
| 524 | 71.09 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 582 | 71.17 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 3 |
| 653 | 71.23 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 706 | 71.27 | radiation | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 707 | 71.28 | radiation | 10 | 270 | < th | dose independent | no | NA | NA |
| 766 | 71.33 | radiation | 1 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 789 | 71.37 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 20 |
| 821 | 71.40 | radiation | 10 | 720 | < th | dose independent | rect. | 6 | 16 |
| 829 | 71.40 | radiation | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 838 | 71.43 | radiation | 40 | 720 | < th | dose dependent | sin | 11 | NA |
| 855 | 71.46 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 5 |
| 859 | 71.46 | radiation | 1 | 10 | > th | dose dependent | sin | 7 | NA |
| 875 | 71.48 | radiation | 10 | 720 | < th | dose independent | rect. | 1 | 10 |
| 897 | 71.50 | radiation | 10 | 720 | < th | dose independent | rect. | 2 | 20 |
| 926 | 71.53 | radiation | 40 | 720 | < th | dose independent | rect. | 1 | 12 |
| 957 | 71.56 | radiation | 1 | 90 | > th | dose dependent | sin | 7 | NA |
| 978 | 71.57 | radiation | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 980 | 71.58 | radiation | 30 | 10 | < th | dose independent | rect. | 11 | 20 |