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Os04g0488000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to PITSLRE serine/threonine-protein kinase CDC2L1 (EC 2.7.1.37) (Galactosyltransferase associated protein kinase p58/GTA) (Cell division cycle 2-like protein kinase 1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 118.12 | 0.511 | 9.31 | -3.18 | 1.1 | -2.05 | 1.51 | -2.31 | 0.0599 | 4.81 | 21.87 | 6 | -- | -- |
| 122.06 | 0.519 | 9.35 | -3.36 | 1.07 | -1.45 | 1.03 | -- | 0.00264 | 4.93 | 23.11 | 10 | -- | -- |
| 123.19 | 0.521 | 9.33 | -3.24 | 1.09 | -1.71 | -- | -1.24 | 0.0312 | 4.89 | 22.5 | 6 | -- | -- |
| 124.76 | 0.524 | 9.35 | -3.36 | 1.08 | -1.44 | -- | -- | -0.00507 | 4.92 | 23.2 | 9 | -- | -- |
| 184.4 | 0.636 | 9.34 | -3.18 | -- | -1.29 | -- | -0.766 | 0.092 | -- | 22.5 | 6 | -- | -- |
| 148.52 | 0.571 | 9.3 | -3.07 | 0.99 | -- | 1.02 | -- | 0.195 | 5.63 | -- | -- | -- | -- |
| 151.06 | 0.576 | 9.3 | -3.07 | 0.996 | -- | -- | -- | 0.191 | 5.67 | -- | -- | -- | -- |
| 184.84 | 0.636 | 9.35 | -3.26 | -- | -1.13 | -- | -- | 0.0675 | -- | 23.1 | 6 | -- | -- |
| 387.22 | 0.916 | 9.2 | -- | 0.806 | 1.05 | -- | -- | 0.658 | 6.96 | 43.94 | 2 | -- | -- |
| 202.58 | 0.665 | 9.32 | -3.04 | -- | -- | -- | -- | 0.215 | -- | -- | -- | -- | -- |
| 398.95 | 0.934 | 9.23 | -- | 0.948 | -- | -- | -- | 0.533 | 5.82 | -- | -- | -- | -- |
| 400.96 | 0.933 | 9.21 | -- | -- | 1.65 | -- | -- | 0.714 | -- | 34.8 | 323 | -- | -- |
| 445.58 | 0.985 | 9.24 | -- | -- | -- | -- | -- | 0.552 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 120.10 | temperature | 25 | 10 | < th | dose dependent | sin | 9 | NA |
| 7 | 121.19 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 14 |
| 17 | 121.63 | temperature | 25 | 10 | < th | dose dependent | rect. | 11 | 20 |
| 23 | 121.87 | temperature | 25 | 270 | < th | dose dependent | rect. | 17 | 11 |
| 24 | 121.91 | temperature | 25 | 270 | < th | dose dependent | rect. | 19 | 9 |
| 31 | 122.01 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 5 |
| 47 | 122.25 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 50 | 122.30 | temperature | 25 | 10 | < th | dose dependent | rect. | 22 | 9 |
| 66 | 122.40 | temperature | 25 | 10 | < th | dose dependent | rect. | 16 | 20 |
| 85 | 122.60 | temperature | 25 | 10 | < th | dose dependent | rect. | 8 | 23 |
| 142 | 123.26 | temperature | 20 | 10 | > th | dose independent | rect. | 18 | 14 |
| 152 | 123.31 | temperature | 25 | 270 | < th | dose dependent | rect. | 11 | 17 |
| 172 | 123.48 | temperature | 20 | 10 | < th | dose independent | rect. | 9 | 21 |
| 187 | 123.56 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 202 | 123.64 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 217 | 123.74 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 218 | 123.75 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 219 | 123.77 | temperature | 20 | 10 | < th | dose independent | rect. | 17 | 13 |
| 220 | 123.78 | temperature | 20 | 10 | < th | dose independent | rect. | 17 | 20 |
| 241 | 123.89 | temperature | 25 | 10 | < th | dose dependent | rect. | 22 | 14 |
| 288 | 124.16 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 291 | 124.17 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 294 | 124.19 | temperature | 20 | 10 | > th | dose independent | rect. | 3 | 23 |
| 324 | 124.32 | temperature | 20 | 90 | > th | dose independent | rect. | 17 | 14 |
| 337 | 124.37 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 14 |
| 340 | 124.40 | temperature | 20 | 10 | < th | dose independent | sin | 10 | NA |
| 350 | 124.41 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 496 | 124.85 | temperature | 20 | 10 | < th | dose independent | rect. | 23 | 23 |
| 500 | 124.87 | temperature | 20 | 10 | > th | dose independent | sin | 10 | NA |
| 506 | 124.88 | temperature | 10 | 10 | > th | dose dependent | sin | 10 | NA |
| 535 | 124.95 | temperature | 20 | 10 | < th | dose independent | no | NA | NA |
| 538 | 124.95 | temperature | 20 | 10 | < th | dose independent | rect. | 21 | 23 |
| 545 | 124.96 | temperature | 20 | 10 | < th | dose independent | rect. | 1 | 23 |
| 552 | 124.98 | temperature | 20 | 10 | < th | dose independent | rect. | 19 | 23 |
| 613 | 125.18 | temperature | 20 | 10 | < th | dose independent | rect. | 5 | 23 |
| 629 | 125.22 | temperature | 20 | 10 | < th | dose independent | rect. | 3 | 23 |
| 722 | 125.48 | temperature | 20 | 10 | > th | dose independent | no | NA | NA |
| 924 | 126.25 | temperature | 20 | 10 | > th | dose independent | rect. | 17 | 19 |
| 982 | 126.43 | temperature | 20 | 10 | > th | dose independent | rect. | 13 | 23 |
| 986 | 126.44 | temperature | 20 | 10 | > th | dose independent | rect. | 17 | 23 |
| 997 | 126.47 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 7 |
