Os04g0487300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to DNA-directed RNA polymerase II 23 kDa polypeptide (EC 2.7.7.6) (RPB25) (RPB5) (RPABC1) (XAP4).
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Os04g0487300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to DNA-directed RNA polymerase II 23 kDa polypeptide (EC 2.7.7.6) (RPB25) (RPB5) (RPABC1) (XAP4).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 74.22 | 0.405 | 9.04 | 0.699 | 0.791 | 1.29 | 0.697 | -0.378 | 0.217 | 16.7 | 18 | 89 | -- | -- |
| 74.33 | 0.402 | 9.03 | 0.755 | 0.792 | 1.28 | 0.593 | -- | 0.232 | 16.7 | 17.91 | 88 | -- | -- |
| 75.2 | 0.404 | 9.03 | 0.776 | 0.796 | 1.29 | -- | 0.119 | 0.239 | 16.7 | 17.9 | 92 | -- | -- |
| 75.22 | 0.404 | 9.03 | 0.76 | 0.785 | 1.3 | -- | -- | 0.235 | 16.7 | 17.97 | 92 | -- | -- |
| 97.5 | 0.46 | 9.04 | 0.599 | -- | 1.96 | -- | 0.0926 | 0.12 | -- | 18.1 | 148 | -- | -- |
| 96.68 | 0.461 | 8.99 | 1.05 | 1.21 | -- | 0.815 | -- | 0.446 | 16.2 | -- | -- | -- | -- |
| 98.54 | 0.465 | 8.98 | 1.06 | 1.21 | -- | -- | -- | 0.451 | 16.1 | -- | -- | -- | -- |
| 97.51 | 0.46 | 9.05 | 0.582 | -- | 1.97 | -- | -- | 0.115 | -- | 18.1 | 148 | -- | -- |
| 88.81 | 0.439 | 9.06 | -- | 0.684 | 1.75 | -- | -- | 0.108 | 16.9 | 16.16 | 94 | -- | -- |
| 178.22 | 0.624 | 8.98 | 1.01 | -- | -- | -- | -- | 0.419 | -- | -- | -- | -- | -- |
| 128.09 | 0.529 | 9.01 | -- | 1.19 | -- | -- | -- | 0.333 | 16.1 | -- | -- | -- | -- |
| 105.86 | 0.479 | 9.07 | -- | -- | 2.14 | -- | -- | 0.03 | -- | 17.87 | 148 | -- | -- |
| 205.12 | 0.669 | 9 | -- | -- | -- | -- | -- | 0.306 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 72.81 | temperature | 10 | 90 | > th | dose dependent | sin | 1 | NA |
| 23 | 73.84 | temperature | 20 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 46 | 74.39 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 49 | 74.43 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 20 |
| 55 | 74.55 | temperature | 30 | 90 | < th | dose dependent | sin | 0 | NA |
| 57 | 74.59 | temperature | 30 | 270 | < th | dose dependent | sin | 2 | NA |
| 59 | 74.67 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 64 | 74.73 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 66 | 74.76 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 23 |
| 74 | 74.84 | temperature | 20 | 10 | > th | dose dependent | rect. | 22 | 23 |
| 78 | 74.87 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 79 | 74.88 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 88 | 74.96 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 21 |
| 101 | 75.12 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 117 | 75.40 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 162 | 75.83 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 192 | 76.08 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 22 |
| 215 | 76.25 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 10 |
| 216 | 76.27 | temperature | 20 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 223 | 76.33 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 7 |
| 228 | 76.34 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 5 |
| 232 | 76.36 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 245 | 76.40 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 266 | 76.51 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 270 | 76.52 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 13 |
| 276 | 76.53 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 284 | 76.58 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 11 |
| 287 | 76.59 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 7 |
| 293 | 76.61 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 12 |
| 296 | 76.62 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 15 |
| 316 | 76.69 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 13 |
| 326 | 76.71 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 330 | 76.72 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 11 |
| 337 | 76.74 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 374 | 76.82 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 398 | 76.85 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 399 | 76.86 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 417 | 76.88 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 473 | 76.98 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 523 | 77.05 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 14 |
| 576 | 77.13 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 639 | 77.22 | temperature | 15 | 720 | > th | dose dependent | rect. | 5 | 7 |
| 662 | 77.25 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 10 |
| 664 | 77.25 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 16 |
| 669 | 77.26 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 2 |
| 977 | 77.60 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 994 | 77.63 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |