Os04g0487200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os04g0487200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 183.95 | 0.637 | 5.59 | 2.2 | 0.399 | -1.25 | -0.888 | -0.113 | 0.39 | 13.9 | 20.4 | 8 | -- | -- |
| 183.96 | 0.632 | 5.59 | 2.22 | 0.394 | -1.24 | -0.904 | -- | 0.394 | 13.9 | 20.4 | 7 | -- | -- |
| 185.98 | 0.635 | 5.6 | 2.03 | 0.421 | -1.29 | -- | -1.01 | 0.353 | 14.6 | 20.37 | 14 | -- | -- |
| 187.07 | 0.637 | 5.59 | 2.21 | 0.428 | -1.31 | -- | -- | 0.402 | 14.5 | 20.4 | 14 | -- | -- |
| 192.22 | 0.649 | 5.64 | 1.86 | -- | -0.828 | -- | -1.46 | 0.254 | -- | 19.71 | 14 | -- | -- |
| 207.14 | 0.675 | 5.64 | 1.98 | 0.0536 | -- | 1.17 | -- | 0.186 | 0.916 | -- | -- | -- | -- |
| 212.88 | 0.683 | 5.65 | 1.93 | 0.062 | -- | -- | -- | 0.179 | 3.03 | -- | -- | -- | -- |
| 194.09 | 0.649 | 5.61 | 2.11 | -- | -0.902 | -- | -- | 0.327 | -- | 20.4 | 14 | -- | -- |
| 305.69 | 0.819 | 5.68 | -- | 0.12 | -0.582 | -- | -- | 0.0442 | 14 | 21.8 | 5 | -- | -- |
| 213.1 | 0.682 | 5.65 | 1.93 | -- | -- | -- | -- | 0.18 | -- | -- | -- | -- | -- |
| 311.24 | 0.825 | 5.69 | -- | 0.1 | -- | -- | -- | -0.0364 | 3.12 | -- | -- | -- | -- |
| 306.27 | 0.818 | 5.68 | -- | -- | -0.474 | -- | -- | 0.0278 | -- | 21.8 | 5 | -- | -- |
| 311.81 | 0.824 | 5.69 | -- | -- | -- | -- | -- | -0.0343 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 177.70 | temperature | 25.0 | 10 | < th | dose dependent | sin | 22 | NA |
| 4 | 178.96 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 7 | 180.23 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 8 | 10 |
| 9 | 180.60 | temperature | 25.0 | 270 | > th | dose independent | rect. | 23 | 21 |
| 18 | 181.56 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 2 | 20 |
| 19 | 181.58 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 9 | 13 |
| 21 | 181.71 | temperature | 25.0 | 30 | < th | dose independent | rect. | 5 | 21 |
| 30 | 182.19 | temperature | 25.0 | 30 | > th | dose independent | rect. | 9 | 11 |
| 33 | 182.27 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 5 | 21 |
| 42 | 182.67 | temperature | 25.0 | 30 | > th | dose independent | rect. | 9 | 13 |
| 44 | 182.73 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 45 | 182.78 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 50 | 182.89 | temperature | 25.0 | 10 | < th | dose independent | sin | 21 | NA |
| 64 | 183.19 | temperature | 25.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 72 | 183.36 | temperature | 25.0 | 30 | > th | dose independent | sin | 22 | NA |
| 73 | 183.37 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 74 | 183.39 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 6 | 23 |
| 86 | 183.62 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 6 | 13 |
| 95 | 183.84 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 107 | 184.02 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 117 | 184.14 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 124 | 184.23 | temperature | 20.0 | 10 | > th | dose dependent | no | NA | NA |
| 125 | 184.24 | temperature | 25.0 | 10 | < th | dose independent | rect. | 8 | 11 |
| 126 | 184.25 | temperature | 30.0 | 30 | < th | dose dependent | no | NA | NA |
| 137 | 184.38 | temperature | 25.0 | 30 | < th | dose independent | rect. | 5 | 14 |
| 143 | 184.41 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 147 | 184.45 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 152 | 184.48 | wind | 7.0 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 155 | 184.48 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 161 | 184.54 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 4 | 23 |
| 165 | 184.56 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 173 | 184.66 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 175 | 184.68 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 184 | 184.76 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 2 | 18 |
| 209 | 185.03 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 9 | 18 |
| 211 | 185.05 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 222 | 185.14 | temperature | 25.0 | 270 | < th | dose independent | rect. | 9 | 23 |
| 232 | 185.25 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 235 | 185.32 | temperature | 25.0 | 270 | < th | dose independent | rect. | 20 | 22 |
| 239 | 185.34 | temperature | 10.0 | 10 | > th | dose dependent | no | NA | NA |
| 250 | 185.41 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 263 | 185.53 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 9 | 11 |
| 266 | 185.58 | wind | 1.0 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 270 | 185.61 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 10 | 8 |
| 278 | 185.66 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 10 | 8 |
| 305 | 185.81 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 310 | 185.85 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 321 | 185.89 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 332 | 186.00 | temperature | 25.0 | 90 | < th | dose independent | rect. | 11 | 8 |
| 365 | 186.14 | temperature | 25.0 | 270 | < th | dose independent | rect. | 11 | 23 |
| 393 | 186.23 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 396 | 186.24 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 23 |
| 414 | 186.33 | temperature | 20.0 | 10 | > th | dose dependent | sin | 22 | NA |
| 427 | 186.37 | wind | 9.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 428 | 186.37 | temperature | 10.0 | 10 | > th | dose dependent | sin | 22 | NA |
| 444 | 186.44 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 4 | 18 |
| 450 | 186.47 | temperature | 25.0 | 90 | > th | dose independent | rect. | 8 | 22 |
| 460 | 186.50 | temperature | 25.0 | 270 | > th | dose independent | rect. | 5 | 22 |
| 467 | 186.53 | temperature | 25.0 | 270 | < th | dose independent | no | NA | NA |
| 486 | 186.62 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 6 | 13 |
| 494 | 186.65 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 6 | 13 |
| 498 | 186.66 | temperature | 25.0 | 720 | < th | dose dependent | sin | 23 | NA |
| 508 | 186.71 | temperature | 25.0 | 270 | > th | dose independent | rect. | 13 | 23 |
| 523 | 186.76 | temperature | 25.0 | 90 | > th | dose independent | rect. | 8 | 19 |
| 526 | 186.76 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 542 | 186.80 | wind | 9.0 | 4320 | < th | dose independent | rect. | 20 | 7 |
| 557 | 186.88 | temperature | 25.0 | 270 | > th | dose independent | no | NA | NA |
| 560 | 186.88 | temperature | 25.0 | 270 | < th | dose independent | rect. | 22 | 23 |
| 564 | 186.90 | wind | 5.0 | 1440 | > th | dose independent | rect. | 6 | 2 |
| 577 | 186.93 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 586 | 186.96 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 7 | 11 |
| 597 | 187.00 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 601 | 187.02 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 3 | 6 |
| 628 | 187.11 | wind | 5.0 | 1440 | > th | dose independent | rect. | 3 | 6 |
| 638 | 187.13 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 642 | 187.14 | wind | 9.0 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 667 | 187.24 | wind | 9.0 | 4320 | > th | dose independent | rect. | 19 | 7 |
| 694 | 187.30 | wind | 9.0 | 4320 | > th | dose independent | rect. | 19 | 4 |
| 700 | 187.31 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 20 | 6 |
| 723 | 187.37 | temperature | 25.0 | 270 | > th | dose independent | rect. | 15 | 23 |
| 749 | 187.48 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 750 | 187.48 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 9 | 17 |
| 758 | 187.49 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 20 | 4 |
| 764 | 187.50 | wind | 5.0 | 1440 | < th | dose independent | rect. | 3 | 6 |
| 791 | 187.58 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 15 | 3 |
| 803 | 187.60 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 7 | 8 |
| 809 | 187.63 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 15 | 3 |
| 852 | 187.75 | wind | 5.0 | 1440 | < th | dose independent | rect. | 6 | 2 |
| 882 | 187.82 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 888 | 187.83 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 892 | 187.85 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 894 | 187.85 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 3 | 2 |
| 905 | 187.88 | temperature | 25.0 | 720 | < th | dose independent | rect. | 3 | 15 |
| 975 | 188.07 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 977 | 188.07 | temperature | 25.0 | 270 | < th | dose independent | rect. | 15 | 23 |
| 979 | 188.07 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 984 | 188.09 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 18 | 23 |
| 992 | 188.11 | wind | 1.0 | 1440 | < th | dose independent | rect. | 5 | 2 |