Os04g0486300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF295 family protein.
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Os04g0486300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF295 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67.59 | 0.386 | 5.98 | 0.48 | 0.423 | 0.847 | 0.444 | 1.03 | 0.112 | 7.41 | 44.94 | 1272 | -- | -- |
| 68.85 | 0.386 | 5.98 | 0.396 | 0.412 | 0.87 | 0.409 | -- | 0.096 | 7.29 | 45.26 | 1305 | -- | -- |
| 68.03 | 0.384 | 5.98 | 0.495 | 0.411 | 0.863 | -- | 1.01 | 0.117 | 7.4 | 45.75 | 1305 | -- | -- |
| 69.29 | 0.388 | 5.98 | 0.402 | 0.411 | 0.88 | -- | -- | 0.091 | 7.36 | 45.19 | 1305 | -- | -- |
| 76.47 | 0.407 | 5.99 | 0.52 | -- | 0.85 | -- | 1.11 | 0.136 | -- | 46.46 | 1348 | -- | -- |
| 88.46 | 0.441 | 5.97 | 0.412 | 0.399 | -- | 0.513 | -- | 0.174 | 6.26 | -- | -- | -- | -- |
| 89.1 | 0.442 | 5.97 | 0.418 | 0.402 | -- | -- | -- | 0.172 | 6.37 | -- | -- | -- | -- |
| 77.91 | 0.411 | 5.99 | 0.423 | -- | 0.878 | -- | -- | 0.116 | -- | 46.56 | 1346 | -- | -- |
| 73.02 | 0.398 | 6 | -- | 0.426 | 0.811 | -- | -- | 0.0139 | 7.44 | 40 | 1272 | -- | -- |
| 97.49 | 0.461 | 5.97 | 0.429 | -- | -- | -- | -- | 0.181 | -- | -- | -- | -- | -- |
| 93.71 | 0.453 | 5.98 | -- | 0.408 | -- | -- | -- | 0.126 | 6.31 | -- | -- | -- | -- |
| 82.09 | 0.422 | 6.01 | -- | -- | 0.803 | -- | -- | 0.0119 | -- | 40.1 | 1348 | -- | -- |
| 102.33 | 0.472 | 5.98 | -- | -- | -- | -- | -- | 0.133 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 66.49 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 21 |
| 4 | 66.97 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 2 |
| 22 | 67.35 | radiation | 40 | 1440 | > th | dose dependent | sin | 12 | NA |
| 25 | 68.59 | radiation | 20 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 46 | 69.16 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 78 | 69.48 | radiation | 40 | 1440 | < th | dose independent | rect. | 13 | 20 |
| 79 | 69.49 | radiation | 40 | 1440 | > th | dose independent | rect. | 13 | 20 |
| 80 | 69.50 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 82 | 69.52 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 83 | 69.57 | radiation | 40 | 1440 | > th | dose dependent | rect. | 8 | 3 |
| 101 | 69.65 | radiation | 40 | 1440 | > th | dose independent | rect. | 13 | 2 |
| 123 | 69.82 | radiation | 40 | 1440 | < th | dose independent | rect. | 13 | 4 |
| 126 | 69.83 | radiation | 40 | 1440 | < th | dose independent | rect. | 13 | 15 |
| 129 | 69.83 | humidity | 70 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 130 | 69.84 | radiation | 40 | 1440 | < th | dose independent | rect. | 13 | 12 |
| 131 | 69.85 | humidity | 70 | 720 | < th | dose independent | rect. | 19 | 12 |
| 145 | 69.91 | humidity | 70 | 720 | < th | dose independent | rect. | 19 | 1 |
| 156 | 69.93 | humidity | 70 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 169 | 69.97 | radiation | 40 | 1440 | > th | dose dependent | rect. | 8 | 7 |
| 186 | 69.98 | radiation | 40 | 1440 | > th | dose dependent | no | NA | NA |
| 388 | 70.12 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 1 |
| 472 | 70.50 | wind | 7 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 473 | 70.54 | wind | 7 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 474 | 70.56 | wind | 7 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 475 | 70.60 | radiation | 20 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 490 | 70.80 | radiation | 40 | 1440 | > th | dose independent | sin | 13 | NA |
| 492 | 70.96 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 493 | 70.98 | radiation | 40 | 1440 | < th | dose independent | sin | 13 | NA |
| 497 | 71.07 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 533 | 71.16 | radiation | 30 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 584 | 71.36 | radiation | 30 | 4320 | < th | dose independent | rect. | 24 | 8 |
| 600 | 71.41 | humidity | 50 | 1440 | > th | dose independent | rect. | 17 | 8 |
| 601 | 71.41 | humidity | 50 | 1440 | > th | dose independent | rect. | 17 | 11 |
| 670 | 71.43 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 672 | 71.44 | radiation | 30 | 4320 | < th | dose independent | rect. | 21 | 11 |
| 683 | 71.45 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 17 |
| 751 | 71.61 | wind | 3 | 43200 | > th | dose independent | rect. | 2 | 2 |
| 756 | 71.63 | radiation | 30 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 828 | 71.75 | radiation | 30 | 4320 | < th | dose independent | rect. | 17 | 15 |
| 833 | 71.80 | humidity | 70 | 720 | < th | dose independent | sin | 11 | NA |
| 848 | 71.81 | wind | 3 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 854 | 71.86 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 8 |