Os04g0485700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os04g0485700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.59 | 0.303 | 10 | -0.0908 | 0.964 | 0.0581 | -0.219 | 5.79 | -0.517 | 18 | 30.1 | 637 | -- | -- |
| 42.96 | 0.305 | 10.1 | -0.547 | 0.95 | 0.687 | 0.0152 | -- | -0.531 | 18.1 | 30.3 | 592 | -- | -- |
| 41.7 | 0.301 | 10 | -0.0868 | 0.968 | 0.0513 | -- | 5.77 | -0.514 | 18 | 30.08 | 637 | -- | -- |
| 42.8 | 0.305 | 10.1 | -0.613 | 0.939 | 0.717 | -- | -- | -0.541 | 18 | 30.39 | 573 | -- | -- |
| 77.94 | 0.411 | 9.98 | -0.173 | -- | 0.704 | -- | 5.89 | -0.494 | -- | 29.78 | 537 | -- | -- |
| 52.05 | 0.338 | 10.1 | -0.519 | 1.14 | -- | 0.418 | -- | -0.6 | 18.2 | -- | -- | -- | -- |
| 52.47 | 0.339 | 10.1 | -0.523 | 1.15 | -- | -- | -- | -0.598 | 18.1 | -- | -- | -- | -- |
| 66.68 | 0.38 | 10.1 | -0.745 | -- | 1.17 | -- | -- | -0.737 | -- | 28.6 | 494 | -- | -- |
| 52.54 | 0.338 | 10.1 | -- | 0.976 | 0.638 | -- | -- | -0.472 | 18 | 30.5 | 589 | -- | -- |
| 120.69 | 0.513 | 10.1 | -0.556 | -- | -- | -- | -- | -0.624 | -- | -- | -- | -- | -- |
| 59.69 | 0.361 | 10.1 | -- | 1.15 | -- | -- | -- | -0.54 | 18.1 | -- | -- | -- | -- |
| 81.02 | 0.419 | 10.1 | -- | -- | 1.09 | -- | -- | -0.642 | -- | 28.63 | 486 | -- | -- |
| 128.83 | 0.53 | 10.1 | -- | -- | -- | -- | -- | -0.562 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.65 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 10 |
| 3 | 40.88 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 6 |
| 4 | 41.00 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 9 |
| 18 | 41.01 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 12 |
| 20 | 41.03 | temperature | 30 | 720 | > th | dose independent | sin | 4 | NA |
| 24 | 41.10 | temperature | 30 | 720 | > th | dose independent | rect. | 9 | 6 |
| 56 | 41.18 | temperature | 25 | 720 | > th | dose dependent | rect. | 23 | 18 |
| 59 | 41.28 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 117 | 41.57 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 121 | 41.59 | temperature | 30 | 720 | < th | dose independent | sin | 0 | NA |
| 136 | 41.73 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 2 |
| 141 | 41.81 | temperature | 30 | 720 | < th | dose independent | rect. | 19 | 23 |
| 145 | 41.82 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 172 | 41.89 | temperature | 30 | 720 | > th | dose dependent | sin | 5 | NA |
| 175 | 41.90 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 14 |
| 248 | 42.03 | temperature | 30 | 270 | < th | dose independent | rect. | 24 | 23 |
| 260 | 42.09 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 12 |
| 263 | 42.11 | temperature | 30 | 720 | < th | dose independent | rect. | 2 | 19 |
| 273 | 42.14 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 21 |
| 286 | 42.21 | temperature | 30 | 720 | > th | dose independent | rect. | 15 | 23 |
| 303 | 42.27 | temperature | 30 | 720 | > th | dose independent | no | NA | NA |
| 412 | 42.32 | temperature | 30 | 270 | < th | dose independent | rect. | 10 | 11 |
| 428 | 42.32 | temperature | 10 | 720 | > th | dose dependent | sin | 0 | NA |
| 442 | 42.36 | temperature | 30 | 720 | < th | dose independent | no | NA | NA |
| 474 | 42.44 | temperature | 30 | 720 | > th | dose dependent | rect. | 13 | 2 |
| 526 | 42.51 | humidity | 60 | 720 | > th | dose independent | rect. | 11 | 2 |
| 541 | 42.56 | temperature | 30 | 720 | > th | dose independent | rect. | 13 | 23 |
| 565 | 42.62 | temperature | 30 | 720 | > th | dose independent | rect. | 11 | 23 |
| 628 | 42.75 | temperature | 30 | 720 | > th | dose dependent | no | NA | NA |
| 747 | 42.79 | temperature | 30 | 720 | < th | dose independent | rect. | 19 | 18 |
| 793 | 42.90 | temperature | 30 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 810 | 42.96 | temperature | 30 | 720 | > th | dose dependent | rect. | 13 | 23 |
| 818 | 42.98 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 1 |
| 821 | 42.99 | humidity | 60 | 720 | < th | dose independent | rect. | 13 | 2 |
| 862 | 43.06 | temperature | 30 | 720 | > th | dose independent | rect. | 15 | 1 |
| 885 | 43.13 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 22 |
| 913 | 43.22 | humidity | 60 | 720 | < th | dose independent | rect. | 12 | 5 |
| 929 | 43.24 | temperature | 30 | 270 | < th | dose independent | sin | 21 | NA |