Os04g0484900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Kluyveromyces lactis strain NRRL Y-1140 chromosome E of strain NRRL Y- 1140 of Kluyveromyces lactis.
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Os04g0484900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Kluyveromyces lactis strain NRRL Y-1140 chromosome E of strain NRRL Y- 1140 of Kluyveromyces lactis.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59.94 | 0.364 | 11 | 0.515 | 0.989 | -8.63 | 0.232 | -28.4 | 0.341 | 19.8 | 7.027 | 10 | 15 | 0.965 |
| 106.2 | 0.484 | 11 | 0.629 | 0.98 | -2.23 | 0.0491 | -- | 0.337 | 19.9 | 7.299 | 8 | 15.1 | 0.945 |
| 60.09 | 0.361 | 11 | 0.51 | 0.99 | -8.62 | -- | -28.3 | 0.342 | 19.8 | 7.02 | 10 | 15 | 0.961 |
| 51.42 | 0.336 | 11 | 0.69 | 0.979 | -8.65 | -- | -- | 0.345 | 19.9 | 8.1 | 2 | 14 | 2.27 |
| 112.71 | 0.494 | 10.9 | 0.508 | -- | -8.22 | -- | -28.2 | 0.33 | -- | 7.2 | 10 | 15 | 0.948 |
| 125.52 | 0.525 | 11 | 0.622 | 0.929 | -- | 0.0183 | -- | 0.36 | 20.1 | -- | -- | -- | -- |
| 125.52 | 0.525 | 11 | 0.621 | 0.929 | -- | -- | -- | 0.36 | 20.1 | -- | -- | -- | -- |
| 103.35 | 0.476 | 11 | 0.677 | -- | -8.36 | -- | -- | 0.333 | -- | 8.1 | 2 | 14 | 2.27 |
| 63.95 | 0.375 | 11 | -- | 0.973 | -8.5 | -- | -- | 0.269 | 19.9 | 8.055 | 2 | 14.8 | 2.28 |
| 172.94 | 0.614 | 11 | 0.613 | -- | -- | -- | -- | 0.349 | -- | -- | -- | -- | -- |
| 135.69 | 0.545 | 11 | -- | 0.925 | -- | -- | -- | 0.291 | 20.2 | -- | -- | -- | -- |
| 115.43 | 0.502 | 11 | -- | -- | -8.22 | -- | -- | 0.258 | -- | 8.099 | 2 | 14 | 3.95 |
| 182.86 | 0.631 | 11 | -- | -- | -- | -- | -- | 0.281 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 74.47 | wind | 7 | 10 | > th | dose independent | rect. | 15 | 1 |
| 4 | 79.27 | wind | 5 | 10 | > th | dose dependent | rect. | 15 | 1 |
| 14 | 87.38 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 15 | 1 |
| 22 | 89.68 | temperature | 25 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 42 | 93.34 | wind | 5 | 270 | > th | dose dependent | rect. | 12 | 1 |
| 56 | 95.38 | radiation | 40 | 90 | > th | dose independent | rect. | 14 | 1 |
| 59 | 95.86 | wind | 7 | 270 | > th | dose independent | rect. | 12 | 1 |
| 64 | 96.26 | radiation | 30 | 30 | > th | dose independent | rect. | 15 | 17 |
| 117 | 97.12 | temperature | 25 | 90 | < th | dose independent | rect. | 14 | 2 |
| 179 | 98.66 | wind | 7 | 30 | > th | dose dependent | rect. | 14 | 6 |
| 503 | 105.39 | wind | 7 | 10 | > th | dose independent | sin | 15 | NA |
| 606 | 107.08 | radiation | 30 | 30 | > th | dose dependent | rect. | 15 | 17 |
| 646 | 107.49 | temperature | 25 | 270 | < th | dose dependent | rect. | 12 | 1 |
| 679 | 108.05 | radiation | 30 | 30 | > th | dose dependent | rect. | 15 | 1 |
| 806 | 110.37 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 15 | 1 |
| 824 | 110.51 | wind | 7 | 10 | < th | dose independent | sin | 16 | NA |
| 875 | 111.05 | wind | 5 | 30 | > th | dose dependent | sin | 16 | NA |
| 953 | 111.73 | wind | 7 | 10 | > th | dose dependent | sin | 14 | NA |