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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0484300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.92 (0.0337) R2 : 0.00503
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.108 (0.0709) R2dN8 : 0.00649 R2N8 : 0.00503
σ : 0.634
deviance : 184.63
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
173.7 0.619 2.92 -0.0377 0.0942 1.16 -0.083 2.91 0.122 8.62 1014 2390 -- --
181.2 0.627 2.91 0.095 0.0818 0.601 -0.103 -- 0.143 8.81 1013 2421 -- --
173.58 0.614 2.93 -0.0504 0.102 1.38 -- 3.33 0.115 8.12 1015 2335 -- --
181.24 0.627 2.91 0.0946 0.0845 0.594 -- -- 0.145 9.02 1013 2418 -- --
174.03 0.614 2.93 -0.0201 -- 1.5 -- 3.55 0.127 -- 1015 2331 -- --
184.11 0.636 2.92 0.0562 0.0822 -- -0.122 -- 0.113 9.23 -- -- -- --
184.15 0.635 2.92 0.0526 0.0828 -- -- -- 0.113 10 -- -- -- --
181.63 0.628 2.91 0.0927 -- 0.594 -- -- 0.145 -- 1013 2411 -- --
181.46 0.627 2.91 -- 0.0823 0.577 -- -- 0.133 8.98 1013 2418 -- --
184.56 0.635 2.92 0.0516 -- -- -- -- 0.113 -- -- -- -- --
184.22 0.635 2.92 -- 0.0826 -- -- -- 0.108 9.95 -- -- -- --
181.85 0.628 2.91 -- -- 0.576 -- -- 0.134 -- 1013 2414 -- --
184.63 0.634 2.92 -- -- -- -- -- 0.108 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 164.55 radiation 10.0 10 < th dose dependent rect. 11 1
9 170.06 radiation 10.0 270 < th dose dependent rect. 11 1
10 170.13 radiation 10.0 270 < th dose independent rect. 11 1
11 170.20 radiation 10.0 10 < th dose independent rect. 11 5
15 171.20 radiation 10.0 10 < th dose independent rect. 12 1
30 172.24 radiation 20.0 10 < th dose dependent rect. 11 5
31 172.25 atmosphere 1015.0 1440 < th dose independent rect. 17 3
42 172.67 atmosphere 1005.0 10 < th dose dependent rect. 5 1
56 173.01 atmosphere 1015.0 1440 < th dose independent rect. 15 5
69 173.18 temperature 20.0 90 > th dose independent rect. 4 2
73 173.37 humidity 90.0 10 > th dose independent rect. 6 1
77 173.41 atmosphere 1010.0 720 > th dose dependent rect. 4 1
93 173.86 humidity 90.0 10 > th dose dependent rect. 6 1
110 174.18 radiation 10.0 90 < th dose independent rect. 19 22
114 174.25 atmosphere 1015.0 1440 < th dose independent rect. 13 8
124 174.41 atmosphere 1010.0 1440 > th dose dependent rect. 16 1
125 174.41 atmosphere 1010.0 1440 > th dose dependent rect. 16 14
126 174.43 atmosphere 1010.0 1440 > th dose dependent rect. 13 17
136 174.48 atmosphere 1015.0 1440 < th dose independent rect. 12 10
158 174.57 precipitation 0.1 270 > th dose independent rect. 2 2
163 174.59 precipitation 0.1 270 > th dose dependent rect. 2 2
173 174.64 temperature 20.0 4320 > th dose independent rect. 23 2
190 174.71 atmosphere 1010.0 1440 > th dose dependent sin 13 NA
199 174.77 temperature 20.0 4320 < th dose independent rect. 23 2
214 174.83 wind 1.0 720 > th dose independent rect. 23 2
228 174.87 atmosphere 1015.0 1440 > th dose independent rect. 12 10
280 175.07 atmosphere 1010.0 1440 > th dose dependent rect. 16 5
287 175.10 wind 5.0 1440 < th dose independent rect. 12 1
289 175.11 radiation 10.0 270 < th dose independent rect. 10 19
300 175.15 humidity 90.0 720 < th dose independent rect. 4 1
306 175.16 radiation 1.0 30 < th dose independent rect. 4 8
382 175.42 radiation 1.0 270 < th dose independent rect. 17 13
391 175.44 radiation 1.0 10 < th dose independent rect. 7 5
393 175.44 atmosphere 1010.0 1440 > th dose dependent rect. 23 4
394 175.44 radiation 1.0 10 < th dose dependent rect. 7 5
397 175.44 radiation 20.0 90 < th dose dependent rect. 19 22
398 175.46 wind 5.0 1440 > th dose independent rect. 12 1
404 175.47 atmosphere 1010.0 1440 > th dose dependent rect. 24 22
423 175.51 radiation 1.0 90 < th dose dependent rect. 4 2
435 175.54 radiation 1.0 90 < th dose dependent rect. 4 8
450 175.57 atmosphere 1010.0 1440 > th dose dependent no NA NA
455 175.57 atmosphere 1010.0 1440 > th dose dependent rect. 16 23
468 175.60 radiation 1.0 90 < th dose independent rect. 4 2
511 175.62 humidity 70.0 30 > th dose independent rect. 14 2
516 175.62 atmosphere 1010.0 1440 > th dose dependent rect. 20 23
518 175.63 atmosphere 1010.0 1440 > th dose dependent rect. 4 23
542 175.67 atmosphere 1010.0 1440 > th dose dependent rect. 24 1
583 175.76 atmosphere 1015.0 1440 > th dose independent rect. 20 1
587 175.77 humidity 90.0 1440 > th dose independent rect. 4 1
592 175.78 radiation 40.0 90 > th dose independent rect. 15 1
612 175.78 radiation 40.0 90 > th dose dependent rect. 15 1
627 175.78 radiation 1.0 10 < th dose dependent rect. 5 11
640 175.79 radiation 10.0 90 > th dose independent rect. 16 23
648 175.80 radiation 1.0 720 < th dose dependent rect. 18 12
696 175.89 wind 9.0 720 < th dose independent rect. 23 18
717 175.92 radiation 20.0 270 < th dose dependent rect. 10 19
720 175.93 wind 3.0 1440 > th dose dependent rect. 12 1
741 175.97 wind 9.0 720 < th dose independent rect. 6 19
743 175.98 atmosphere 1005.0 10 < th dose independent rect. 5 1
753 175.99 wind 9.0 270 < th dose independent rect. 13 12
758 176.00 radiation 30.0 90 < th dose independent rect. 14 1
771 176.03 wind 9.0 270 < th dose independent rect. 6 12
778 176.05 wind 9.0 720 < th dose independent rect. 13 5
792 176.07 wind 5.0 720 < th dose independent rect. 23 2
847 176.19 wind 5.0 30 < th dose dependent rect. 12 1
856 176.20 wind 9.0 720 < th dose independent rect. 13 22
895 176.27 wind 5.0 1440 > th dose independent rect. 11 3
911 176.31 atmosphere 1000.0 720 > th dose independent rect. 11 2
912 176.31 atmosphere 1010.0 720 > th dose dependent sin 5 NA
930 176.35 wind 1.0 720 > th dose independent rect. 11 2
933 176.36 humidity 80.0 720 > th dose independent rect. 23 2
936 176.36 radiation 10.0 90 < th dose independent rect. 21 20
951 176.39 wind 9.0 720 < th dose independent rect. 21 14
957 176.40 atmosphere 1010.0 10 < th dose independent rect. 12 1
998 176.49 wind 9.0 720 < th dose independent rect. 15 10