Os04g0483400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0483400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 97.43 | 0.464 | 8.5 | 1.97 | 1.37 | 1.21 | 0.217 | -0.774 | 0.663 | 18 | 80.26 | 1392 | -- | -- |
| 97.93 | 0.461 | 8.5 | 1.91 | 1.36 | 1.17 | 0.192 | -- | 0.648 | 18 | 80.13 | 1385 | -- | -- |
| 97.55 | 0.46 | 8.5 | 1.97 | 1.37 | 1.21 | -- | -0.747 | 0.663 | 18 | 80.36 | 1390 | -- | -- |
| 98.02 | 0.461 | 8.5 | 1.91 | 1.36 | 1.17 | -- | -- | 0.65 | 18 | 80.21 | 1385 | -- | -- |
| 191.35 | 0.644 | 8.47 | 1.92 | -- | 1.48 | -- | -0.589 | 0.647 | -- | 80.29 | 1332 | -- | -- |
| 115.1 | 0.503 | 8.52 | 1.89 | 1.42 | -- | 0.309 | -- | 0.577 | 17.9 | -- | -- | -- | -- |
| 115.34 | 0.503 | 8.52 | 1.89 | 1.42 | -- | -- | -- | 0.578 | 17.9 | -- | -- | -- | -- |
| 191.59 | 0.645 | 8.47 | 1.88 | -- | 1.45 | -- | -- | 0.638 | -- | 80.4 | 1333 | -- | -- |
| 179.57 | 0.624 | 8.52 | -- | 1.6 | 1.42 | -- | -- | 0.661 | 18.2 | 86 | 2092 | -- | -- |
| 219.98 | 0.693 | 8.5 | 1.84 | -- | -- | -- | -- | 0.546 | -- | -- | -- | -- | -- |
| 209 | 0.676 | 8.57 | -- | 1.39 | -- | -- | -- | 0.368 | 18 | -- | -- | -- | -- |
| 274.59 | 0.772 | 8.43 | -- | -- | 1.56 | -- | -- | 0.596 | -- | 83 | 2756 | -- | -- |
| 309.53 | 0.821 | 8.54 | -- | -- | -- | -- | -- | 0.341 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 87.33 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 2 | 88.23 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 3 |
| 3 | 88.23 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 4 | 88.33 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 19 |
| 7 | 88.98 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 9 | 89.76 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 5 |
| 10 | 89.76 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 5 |
| 12 | 89.80 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 14 | 89.80 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 15 | 89.80 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 18 | 89.80 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 19 | 89.80 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 20 | 89.80 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 23 | 89.80 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 24 | 89.81 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 19 |
| 26 | 89.83 | wind | 5.0 | 90 | < th | dose independent | rect. | 9 | 19 |
| 31 | 90.12 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 36 | 90.27 | wind | 9.0 | 90 | < th | dose dependent | rect. | 9 | 18 |
| 38 | 90.30 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 41 | 90.43 | wind | 5.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 57 | 90.95 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 59 | 90.95 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 60 | 90.95 | humidity | 50.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 62 | 90.95 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 63 | 90.95 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 64 | 90.95 | radiation | 40.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 65 | 90.95 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 19 |
| 75 | 91.19 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 21 |
| 76 | 91.19 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 100 | 91.40 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 111 | 91.53 | wind | 9.0 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 118 | 91.58 | temperature | 10.0 | 90 | > th | dose independent | rect. | 9 | 18 |
| 127 | 91.79 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 19 |
| 128 | 91.79 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 19 |
| 155 | 92.18 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 159 | 92.22 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 166 | 92.31 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 19 |
| 168 | 92.34 | temperature | 25.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 184 | 92.43 | radiation | 1.0 | 30 | < th | dose dependent | sin | 11 | NA |
| 192 | 92.55 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 9 | 18 |
| 195 | 92.55 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 9 | 18 |
| 210 | 92.63 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 9 | 18 |
| 222 | 92.73 | wind | 7.0 | 10 | < th | dose dependent | rect. | 5 | 4 |
| 243 | 92.80 | wind | 7.0 | 270 | < th | dose independent | rect. | 17 | 10 |
| 278 | 93.00 | radiation | 1.0 | 30 | > th | dose independent | rect. | 5 | 4 |
| 313 | 93.10 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 15 |
| 315 | 93.10 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 318 | 93.15 | radiation | 1.0 | 30 | < th | dose independent | sin | 11 | NA |
| 322 | 93.19 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 334 | 93.30 | radiation | 1.0 | 30 | > th | dose independent | sin | 11 | NA |
| 410 | 93.47 | temperature | 15.0 | 270 | > th | dose independent | rect. | 13 | 18 |
| 428 | 93.53 | temperature | 15.0 | 270 | > th | dose independent | rect. | 12 | 10 |
| 460 | 93.64 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 7 |
| 462 | 93.65 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 485 | 93.74 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 18 |
| 486 | 93.74 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 18 |
| 491 | 93.78 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 4 | 5 |
| 495 | 93.85 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 9 | 18 |
| 506 | 93.90 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 19 |
| 565 | 94.34 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 568 | 94.34 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 569 | 94.34 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 5 |
| 571 | 94.34 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 19 |
| 579 | 94.38 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 6 |
| 584 | 94.39 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 595 | 94.43 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 18 | 9 |
| 597 | 94.45 | radiation | 10.0 | 270 | < th | dose independent | rect. | 18 | 9 |
| 603 | 94.48 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 18 | 9 |
| 605 | 94.49 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 619 | 94.56 | temperature | 10.0 | 270 | > th | dose independent | rect. | 18 | 9 |
| 620 | 94.56 | humidity | 50.0 | 270 | > th | dose independent | rect. | 18 | 9 |
| 624 | 94.56 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 15 |
| 625 | 94.56 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 15 |
| 631 | 94.61 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 6 |
| 632 | 94.61 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 6 |
| 634 | 94.61 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 6 |
| 648 | 94.65 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 3 | 6 |
| 650 | 94.66 | humidity | 90.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 657 | 94.67 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 6 |
| 659 | 94.67 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 6 |
| 664 | 94.72 | wind | 1.0 | 270 | > th | dose independent | rect. | 12 | 9 |
| 668 | 94.74 | wind | 9.0 | 270 | < th | dose independent | rect. | 22 | 14 |
| 669 | 94.74 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 18 | 8 |
| 684 | 94.77 | wind | 1.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 713 | 94.96 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 715 | 94.96 | temperature | 15.0 | 10 | > th | dose independent | rect. | 14 | 19 |
| 719 | 94.97 | temperature | 10.0 | 270 | > th | dose independent | rect. | 22 | 14 |
| 720 | 94.97 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 22 | 14 |
| 723 | 95.01 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 748 | 95.08 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 19 |
| 756 | 95.11 | wind | 9.0 | 270 | < th | dose dependent | rect. | 17 | 9 |
| 769 | 95.15 | temperature | 15.0 | 270 | > th | dose independent | rect. | 11 | 21 |
| 785 | 95.20 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 9 |
| 789 | 95.20 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 9 |
| 808 | 95.26 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 18 | 9 |
| 815 | 95.26 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 18 | 9 |
| 841 | 95.35 | radiation | 40.0 | 270 | < th | dose independent | rect. | 13 | 18 |
| 859 | 95.36 | radiation | 1.0 | 30 | > th | dose independent | rect. | 14 | 19 |
| 870 | 95.41 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 11 | 21 |
| 872 | 95.41 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 879 | 95.43 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 14 | 19 |
| 880 | 95.43 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 14 | 19 |
| 883 | 95.44 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 6 |
| 902 | 95.50 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 12 | 9 |
| 904 | 95.50 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 18 |
| 922 | 95.55 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 10 | 22 |
| 933 | 95.59 | radiation | 1.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 951 | 95.65 | wind | 9.0 | 90 | < th | dose dependent | rect. | 9 | 6 |
| 954 | 95.66 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 17 | 15 |
| 961 | 95.69 | radiation | 1.0 | 10 | > th | dose independent | rect. | 9 | 5 |
| 985 | 95.74 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 5 |