FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0482600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, uncharacterized transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.02 (0.0143) R2 : 0.000306
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0112 (0.0301) R2dN8 : 0.000395 R2N8 : 0.000306
σ : 0.269
deviance : 33.27
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
31.28 0.263 3.03 0.168 0.19 -0.19 0.167 -0.455 -0.0261 5.82 89.18 258 -- --
31.56 0.262 3.02 0.148 0.175 -0.211 -0.0549 -- -0.0312 5.66 90.88 228 -- --
31.32 0.261 3.03 0.165 0.186 -0.183 -- -0.359 -0.0264 5.68 89 254 -- --
31.57 0.262 3.02 0.148 0.175 -0.215 -- -- -0.0316 5.73 90.99 227 -- --
32.43 0.265 3.02 0.148 -- -0.0246 -- -0.365 -0.000114 -- 87.8 210 -- --
32.33 0.267 3.02 0.128 0.0889 -- -0.182 -- 0.000292 5.47 -- -- -- --
32.37 0.266 3.02 0.128 0.0926 -- -- -- 0.00136 6.6 -- -- -- --
32.62 0.266 3.02 0.138 -- -0.0858 -- -- -0.00863 -- 92 159 -- --
32.14 0.264 3.03 -- 0.171 -0.194 -- -- -0.0447 5.75 91 226 -- --
32.82 0.268 3.02 0.131 -- -- -- -- 0.00324 -- -- -- -- --
32.8 0.268 3.02 -- 0.0942 -- -- -- -0.0129 6.52 -- -- -- --
33.13 0.268 3.02 -- -- -0.0722 -- -- -0.0221 -- 92 156 -- --
33.27 0.269 3.02 -- -- -- -- -- -0.0112 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 27.46 wind 3.0 30 < th dose dependent rect. 2 1
3 27.49 temperature 15.0 30 > th dose dependent rect. 2 1
4 27.50 temperature 25.0 30 < th dose independent rect. 2 1
8 27.51 wind 3.0 30 < th dose independent rect. 2 1
9 27.51 humidity 80.0 30 > th dose independent rect. 2 1
11 27.54 wind 9.0 30 < th dose independent rect. 2 1
12 27.54 temperature 10.0 30 > th dose independent rect. 2 1
15 27.54 humidity 50.0 30 > th dose independent rect. 2 1
18 27.54 atmosphere 995.0 30 > th dose independent rect. 2 1
19 27.54 atmosphere 1010.0 30 < th dose independent rect. 2 1
21 27.54 radiation 1.0 30 < th dose independent rect. 2 1
26 27.54 precipitation 0.1 30 < th dose independent rect. 2 1
27 27.54 temperature 10.0 30 > th dose independent rect. 3 23
28 27.54 humidity 50.0 30 > th dose dependent rect. 2 1
31 27.54 radiation 1.0 30 < th dose dependent rect. 2 1
36 27.54 precipitation 0.1 30 < th dose dependent rect. 2 1
40 27.57 atmosphere 995.0 30 > th dose dependent rect. 2 1
42 27.58 atmosphere 1015.0 30 < th dose dependent rect. 2 1
44 27.61 atmosphere 1005.0 30 > th dose dependent rect. 2 1
49 27.73 temperature 30.0 30 < th dose dependent rect. 2 1
63 28.10 wind 1.0 30 > th dose independent rect. 2 1
98 28.25 wind 9.0 30 < th dose independent rect. 3 23
106 29.49 temperature 25.0 270 > th dose independent rect. 1 1
114 29.89 atmosphere 995.0 30 > th dose independent rect. 3 23
118 29.98 atmosphere 1005.0 10 > th dose dependent rect. 2 3
129 30.23 temperature 25.0 270 > th dose dependent rect. 1 1
134 30.28 temperature 25.0 270 > th dose dependent rect. 24 5
159 30.50 atmosphere 1005.0 270 > th dose dependent rect. 1 1
162 30.54 wind 1.0 10 < th dose independent rect. 24 3
165 30.55 humidity 90.0 270 < th dose independent rect. 1 1
179 30.68 humidity 90.0 270 < th dose independent rect. 24 3
191 30.73 radiation 40.0 30 < th dose independent rect. 11 16
196 30.75 precipitation 0.1 30 < th dose independent rect. 3 23
197 30.75 precipitation 0.1 30 < th dose dependent rect. 3 23
201 30.76 temperature 25.0 720 > th dose dependent rect. 5 3
204 30.77 wind 1.0 10 < th dose independent rect. 14 13
209 30.80 wind 1.0 10 < th dose independent rect. 17 10
214 30.81 temperature 25.0 270 < th dose independent rect. 23 8
230 30.86 radiation 30.0 30 < th dose independent rect. 3 8
234 30.87 wind 3.0 30 < th dose dependent rect. 22 5
243 30.88 radiation 10.0 10 < th dose independent rect. 3 23
258 30.90 humidity 50.0 30 > th dose dependent rect. 3 8
259 30.91 humidity 90.0 270 > th dose independent rect. 23 7
263 30.92 temperature 25.0 720 > th dose independent rect. 5 3
267 30.92 humidity 90.0 10 < th dose dependent rect. 4 1
274 30.94 humidity 90.0 10 < th dose independent rect. 3 2
283 30.95 wind 7.0 30 < th dose dependent rect. 3 8
285 30.95 radiation 20.0 10 < th dose dependent rect. 3 23
299 30.99 atmosphere 1000.0 30 > th dose independent rect. 3 8
318 31.01 humidity 90.0 270 > th dose independent rect. 21 9
319 31.01 wind 1.0 10 < th dose independent rect. 7 20
321 31.01 radiation 40.0 10 < th dose dependent rect. 3 8
338 31.04 humidity 90.0 270 > th dose independent sin 9 NA
355 31.05 humidity 90.0 270 < th dose independent rect. 20 16
356 31.05 temperature 15.0 90 > th dose independent rect. 5 22
358 31.05 humidity 90.0 270 > th dose dependent rect. 24 5
361 31.05 temperature 10.0 30 > th dose dependent rect. 5 21
362 31.05 temperature 10.0 30 > th dose dependent rect. 3 23
368 31.06 humidity 80.0 4320 < th dose dependent rect. 23 3
374 31.07 humidity 90.0 270 < th dose independent rect. 22 14
388 31.08 humidity 90.0 270 > th dose independent rect. 3 1
389 31.08 atmosphere 1015.0 1440 < th dose independent rect. 3 1
397 31.08 humidity 90.0 10 > th dose independent rect. 3 11
409 31.08 humidity 90.0 270 > th dose independent rect. 13 17
412 31.08 humidity 90.0 270 > th dose dependent rect. 3 1
421 31.09 temperature 25.0 30 < th dose independent rect. 4 1
423 31.09 humidity 90.0 10 > th dose independent rect. 3 7
443 31.09 atmosphere 995.0 30 > th dose dependent rect. 3 8
444 31.09 temperature 10.0 90 > th dose dependent rect. 5 14
445 31.10 humidity 90.0 270 < th dose independent sin 8 NA
455 31.10 temperature 30.0 10 < th dose dependent rect. 4 1
462 31.10 humidity 90.0 270 > th dose dependent rect. 13 17
466 31.11 humidity 60.0 30 > th dose independent rect. 3 8
479 31.11 humidity 90.0 270 > th dose dependent rect. 18 12
488 31.12 temperature 25.0 270 < th dose independent rect. 3 1
490 31.12 atmosphere 1005.0 30 > th dose independent rect. 2 3
493 31.12 wind 5.0 30 < th dose independent rect. 3 8
494 31.12 temperature 30.0 30 < th dose independent rect. 3 8
509 31.12 temperature 10.0 10 > th dose dependent rect. 5 15
510 31.12 humidity 90.0 270 > th dose dependent rect. 24 22
511 31.12 wind 9.0 30 < th dose dependent rect. 3 23
517 31.13 temperature 10.0 30 > th dose independent rect. 3 8
522 31.13 atmosphere 1015.0 30 < th dose independent rect. 3 8
524 31.13 temperature 10.0 30 > th dose independent rect. 11 16
525 31.13 atmosphere 1015.0 30 < th dose independent rect. 11 16
526 31.13 precipitation 0.1 30 < th dose independent rect. 11 16
528 31.13 humidity 90.0 270 > th dose independent rect. 24 22
539 31.13 precipitation 0.1 30 < th dose dependent rect. 11 16
576 31.15 wind 9.0 30 < th dose independent rect. 11 16
597 31.15 radiation 40.0 30 < th dose dependent rect. 11 16
598 31.15 humidity 90.0 30 > th dose dependent rect. 3 19
600 31.16 wind 5.0 10 < th dose independent rect. 4 1
609 31.16 atmosphere 1000.0 90 > th dose independent rect. 5 14
612 31.16 wind 9.0 10 < th dose independent rect. 5 23
614 31.16 humidity 90.0 270 > th dose dependent sin 10 NA
616 31.16 radiation 40.0 10 < th dose dependent rect. 12 1
621 31.16 wind 3.0 10 < th dose dependent rect. 14 13
624 31.16 temperature 15.0 10 > th dose dependent rect. 5 17
626 31.16 humidity 90.0 90 > th dose dependent rect. 1 18
642 31.17 temperature 15.0 90 > th dose independent rect. 7 20
646 31.17 atmosphere 1015.0 30 < th dose independent rect. 3 23
647 31.17 wind 7.0 10 < th dose dependent rect. 4 1
656 31.17 humidity 90.0 90 > th dose dependent rect. 1 11
672 31.18 temperature 10.0 10 > th dose independent rect. 4 1
675 31.18 humidity 50.0 10 > th dose independent rect. 4 1
678 31.18 atmosphere 995.0 10 > th dose independent rect. 4 1
679 31.18 atmosphere 1010.0 10 < th dose independent rect. 4 1
681 31.18 radiation 1.0 10 < th dose independent rect. 4 1
696 31.18 temperature 10.0 10 > th dose independent rect. 5 23
699 31.18 radiation 1.0 10 < th dose dependent rect. 4 1
710 31.18 humidity 90.0 90 > th dose dependent rect. 1 9
739 31.19 wind 7.0 90 < th dose independent rect. 5 14
742 31.19 humidity 90.0 10 > th dose independent rect. 3 19
749 31.19 humidity 50.0 10 > th dose dependent rect. 4 1
768 31.19 humidity 90.0 30 > th dose dependent rect. 3 17
771 31.20 precipitation 0.1 10 < th dose independent rect. 4 1
774 31.20 humidity 90.0 10 > th dose independent rect. 3 5
780 31.20 precipitation 0.1 30 < th dose independent rect. 3 8
798 31.20 precipitation 0.1 10 < th dose dependent rect. 4 1
805 31.20 humidity 90.0 30 > th dose dependent rect. 3 7
812 31.20 precipitation 0.1 30 < th dose dependent rect. 3 8
834 31.21 temperature 15.0 1440 > th dose independent rect. 3 1
838 31.21 temperature 25.0 1440 < th dose independent rect. 24 2
852 31.21 humidity 90.0 270 > th dose independent rect. 23 15
853 31.21 atmosphere 1000.0 10 > th dose independent rect. 5 15
864 31.21 atmosphere 1015.0 10 < th dose dependent rect. 4 1
888 31.22 radiation 30.0 10 < th dose independent rect. 12 1
911 31.22 temperature 10.0 30 > th dose dependent rect. 3 8
929 31.22 temperature 10.0 270 > th dose dependent rect. 3 19
936 31.23 humidity 90.0 10 > th dose independent rect. 3 3
955 31.23 humidity 90.0 270 > th dose independent rect. 23 13
974 31.23 humidity 90.0 720 < th dose dependent rect. 24 1
976 31.23 wind 5.0 30 < th dose dependent rect. 3 6
996 31.23 temperature 10.0 270 > th dose dependent rect. 3 16