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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0481700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Multidrug resistance p-glycoprotein; ABC transporter-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.08 (0.0226) R2 : 0.00472
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0701 (0.0477) R2dN8 : 0.00609 R2N8 : 0.00472
σ : 0.426
deviance : 83.4
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
79.42 0.419 3.09 0.285 0.159 -0.172 -0.126 -0.979 0.0458 5.89 68.07 5846 -- --
80.83 0.419 3.09 0.163 0.16 -0.197 -0.147 -- 0.0107 5.8 68.99 7233 -- --
79.45 0.415 3.09 0.283 0.162 -0.171 -- -0.966 0.0438 6.11 69.08 5866 -- --
80.85 0.419 3.08 0.159 0.149 -0.2 -- -- 0.0211 6.25 67.73 7017 -- --
80.75 0.419 3.1 0.293 -- -0.171 -- -0.978 0.049 -- 69 5794 -- --
81.57 0.423 3.07 0.13 0.159 -- -0.152 -- 0.0806 5.77 -- -- -- --
81.62 0.423 3.07 0.13 0.159 -- -- -- 0.0814 6.15 -- -- -- --
82.11 0.422 3.09 0.162 -- -0.22 -- -- 0.0129 -- 67.08 7042 -- --
81.5 0.42 3.09 -- 0.164 -0.177 -- -- 0.0101 6.38 67.7 8261 -- --
82.93 0.426 3.07 0.134 -- -- -- -- 0.0849 -- -- -- -- --
82.06 0.424 3.07 -- 0.161 -- -- -- 0.067 6.11 -- -- -- --
82.81 0.424 3.09 -- -- -0.186 -- -- 0.00645 -- 67.53 7028 -- --
83.4 0.426 3.08 -- -- -- -- -- 0.0701 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 69.98 wind 1.0 30 < th dose independent rect. 2 1
2 69.99 wind 3.0 30 < th dose dependent rect. 2 1
6 70.05 temperature 25.0 30 < th dose independent rect. 2 1
8 70.05 atmosphere 1005.0 30 > th dose dependent rect. 2 1
9 70.08 temperature 10.0 30 > th dose dependent rect. 2 1
14 70.09 temperature 10.0 30 > th dose independent rect. 2 1
17 70.09 humidity 50.0 30 > th dose independent rect. 2 1
21 70.09 atmosphere 995.0 30 > th dose independent rect. 2 1
22 70.09 atmosphere 1010.0 30 < th dose independent rect. 2 1
24 70.09 radiation 1.0 30 < th dose independent rect. 2 1
29 70.09 precipitation 0.1 30 < th dose independent rect. 2 1
30 70.09 temperature 10.0 30 > th dose independent rect. 3 23
31 70.09 humidity 50.0 30 > th dose dependent rect. 2 1
32 70.09 radiation 1.0 30 < th dose dependent rect. 2 1
37 70.09 precipitation 0.1 30 < th dose dependent rect. 2 1
40 70.11 atmosphere 1015.0 30 < th dose dependent rect. 2 1
43 70.14 atmosphere 995.0 30 > th dose dependent rect. 2 1
47 70.19 atmosphere 1005.0 30 > th dose independent rect. 2 1
48 70.22 temperature 30.0 30 < th dose dependent rect. 2 1
53 70.33 wind 9.0 30 < th dose independent rect. 3 23
65 70.69 wind 1.0 30 > th dose independent rect. 2 1
110 73.22 atmosphere 995.0 30 > th dose independent rect. 3 23
114 73.68 precipitation 0.1 30 < th dose independent rect. 3 23
115 73.68 precipitation 0.1 30 < th dose dependent rect. 3 23
132 75.02 wind 9.0 4320 < th dose independent rect. 3 1
133 75.04 radiation 1.0 43200 < th dose dependent rect. 3 1
140 75.14 temperature 10.0 1440 > th dose independent rect. 3 1
143 75.14 temperature 30.0 1440 < th dose independent rect. 3 1
147 75.14 humidity 50.0 1440 > th dose independent rect. 3 1
156 75.14 atmosphere 995.0 1440 > th dose independent rect. 3 1
157 75.14 radiation 1.0 1440 < th dose independent rect. 3 1
177 75.14 temperature 10.0 1440 > th dose independent rect. 4 23
180 75.14 radiation 1.0 1440 < th dose dependent rect. 3 1
210 75.54 humidity 50.0 30 > th dose independent rect. 3 23
216 75.64 humidity 90.0 90 < th dose independent rect. 2 1
250 75.86 atmosphere 1015.0 30 < th dose independent rect. 3 23
253 76.05 temperature 10.0 720 > th dose independent rect. 15 8
254 76.05 temperature 10.0 720 > th dose independent rect. 23 16
261 76.18 temperature 30.0 10 > th dose independent rect. 15 1
264 76.30 temperature 10.0 720 > th dose independent rect. 3 8
265 76.30 atmosphere 995.0 720 > th dose independent rect. 3 8
266 76.30 temperature 10.0 720 > th dose independent rect. 11 16
274 76.42 wind 9.0 720 < th dose independent rect. 3 8
279 76.48 atmosphere 1015.0 720 < th dose independent rect. 3 8
282 76.52 radiation 40.0 720 < th dose independent rect. 15 8
305 76.99 temperature 30.0 30 < th dose independent rect. 3 23
307 77.02 radiation 10.0 30 < th dose independent rect. 3 23
310 77.05 atmosphere 995.0 720 > th dose independent rect. 23 16
312 77.07 precipitation 0.1 720 < th dose independent rect. 15 8
313 77.07 precipitation 0.1 720 < th dose dependent rect. 15 8
316 77.13 wind 9.0 30 < th dose dependent rect. 3 23
318 77.17 humidity 50.0 720 > th dose independent rect. 3 8
319 77.18 radiation 20.0 30 < th dose dependent rect. 3 23
320 77.19 wind 9.0 720 < th dose independent rect. 15 8
326 77.29 atmosphere 1015.0 1440 < th dose independent rect. 3 1
332 77.34 wind 1.0 30 > th dose dependent rect. 2 1
372 77.47 precipitation 0.1 720 < th dose independent rect. 11 16
373 77.47 precipitation 0.1 720 < th dose dependent rect. 11 16
382 77.58 temperature 25.0 720 > th dose dependent rect. 3 4
386 77.61 wind 9.0 720 < th dose independent rect. 23 16
393 77.65 temperature 25.0 720 > th dose independent rect. 4 3
396 77.67 radiation 20.0 10 > th dose independent rect. 15 2
433 77.72 wind 1.0 10 < th dose independent rect. 15 12
438 77.74 humidity 90.0 90 < th dose independent rect. 1 4
439 77.74 wind 1.0 10 < th dose independent rect. 17 10
441 77.75 wind 1.0 10 < th dose independent rect. 21 6
446 77.75 atmosphere 995.0 30 > th dose dependent rect. 3 23
459 77.82 temperature 25.0 720 > th dose dependent rect. 2 6
558 78.14 wind 1.0 10 < th dose independent rect. 6 21
565 78.18 atmosphere 1000.0 10 > th dose independent rect. 16 10
583 78.25 wind 9.0 720 < th dose independent rect. 11 16
589 78.27 wind 1.0 10 < th dose independent rect. 8 19
608 78.33 radiation 40.0 90 < th dose independent rect. 13 14
618 78.34 radiation 10.0 10 > th dose dependent rect. 15 17
634 78.35 precipitation 0.1 720 < th dose independent rect. 3 8
642 78.35 precipitation 0.1 720 < th dose dependent rect. 3 8
643 78.35 radiation 30.0 10 < th dose dependent rect. 16 10
648 78.36 humidity 60.0 720 > th dose dependent rect. 3 1
660 78.39 atmosphere 1000.0 10 < th dose independent rect. 7 1
670 78.39 atmosphere 1000.0 10 < th dose dependent rect. 7 1
683 78.40 radiation 20.0 10 < th dose independent rect. 16 10
694 78.43 radiation 10.0 10 < th dose independent rect. 14 12
701 78.44 radiation 20.0 30 > th dose dependent rect. 15 1
715 78.44 radiation 20.0 10 < th dose dependent rect. 14 12
724 78.45 temperature 10.0 30 > th dose dependent rect. 3 23
730 78.49 humidity 50.0 30 > th dose independent rect. 2 14
731 78.49 precipitation 0.1 10 < th dose independent rect. 2 14
734 78.49 precipitation 0.1 10 < th dose dependent rect. 2 14
752 78.54 humidity 50.0 30 > th dose dependent rect. 3 23
753 78.55 precipitation 0.1 720 < th dose independent rect. 23 16
756 78.55 precipitation 0.1 720 < th dose dependent rect. 23 16
758 78.56 wind 9.0 10 < th dose independent rect. 16 10
759 78.56 temperature 10.0 1440 > th dose independent rect. 17 10
762 78.56 humidity 50.0 30 > th dose independent rect. 16 10
764 78.56 radiation 30.0 1440 < th dose independent rect. 17 10
770 78.56 temperature 10.0 1440 > th dose independent rect. 3 14
776 78.57 temperature 10.0 10 > th dose independent rect. 16 10
778 78.57 temperature 10.0 10 > th dose independent rect. 2 14
780 78.57 atmosphere 1015.0 10 < th dose independent rect. 2 14
783 78.58 precipitation 0.1 10 < th dose independent rect. 16 10
785 78.58 precipitation 0.1 10 < th dose dependent rect. 16 10
843 78.66 atmosphere 995.0 720 > th dose independent rect. 15 8
844 78.66 atmosphere 1000.0 90 > th dose independent rect. 3 10
845 78.66 wind 9.0 30 < th dose independent rect. 2 14
852 78.67 atmosphere 995.0 10 > th dose independent rect. 2 14
854 78.68 wind 9.0 720 < th dose independent rect. 15 1
859 78.68 wind 1.0 720 < th dose dependent rect. 6 1
872 78.71 wind 5.0 10 > th dose independent rect. 15 1
873 78.71 radiation 1.0 720 > th dose dependent rect. 15 1
892 78.74 temperature 10.0 720 > th dose independent rect. 15 1
894 78.74 atmosphere 1015.0 720 < th dose independent rect. 15 1
895 78.74 precipitation 0.1 720 < th dose independent rect. 15 1
898 78.74 atmosphere 995.0 720 > th dose independent rect. 11 16
899 78.74 temperature 10.0 720 > th dose independent rect. 16 23
900 78.74 precipitation 0.1 720 < th dose dependent rect. 15 1
904 78.75 wind 1.0 720 > th dose independent rect. 15 8
906 78.76 humidity 90.0 720 > th dose independent rect. 3 1
914 78.78 temperature 30.0 14400 < th dose independent rect. 14 1
917 78.78 temperature 30.0 14400 > th dose independent rect. 14 22
918 78.78 temperature 30.0 14400 < th dose independent rect. 14 22
924 78.79 wind 1.0 720 > th dose independent rect. 15 1
927 78.79 temperature 30.0 14400 > th dose independent rect. 8 8
945 78.80 temperature 30.0 14400 > th dose independent rect. 14 2
947 78.80 temperature 30.0 14400 > th dose independent rect. 10 6
949 78.80 temperature 30.0 14400 < th dose independent rect. 8 8
973 78.81 radiation 10.0 10 > th dose independent sin 12 NA
977 78.81 temperature 30.0 14400 < th dose independent rect. 10 6
988 78.82 radiation 20.0 720 > th dose independent rect. 15 1