Os04g0481500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0481500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 184.17 | 0.638 | 3.41 | -0.592 | 0.129 | -0.677 | 0.433 | -1.11 | 0.143 | 21.8 | 1.849 | 2097 | -- | -- |
| 185.5 | 0.634 | 3.42 | -0.59 | 0.133 | -0.704 | 0.282 | -- | 0.156 | 22.3 | 1.8 | 2126 | -- | -- |
| 184.84 | 0.633 | 3.41 | -0.603 | 0.122 | -0.668 | -- | -0.951 | 0.142 | 22.2 | 1.856 | 2088 | -- | -- |
| 185.81 | 0.635 | 3.42 | -0.611 | 0.135 | -0.717 | -- | -- | 0.154 | 22.7 | 1.867 | 2126 | -- | -- |
| 185.78 | 0.635 | 3.41 | -0.591 | -- | -0.614 | -- | -1 | 0.127 | -- | 1.829 | 2088 | -- | -- |
| 191.01 | 0.648 | 3.46 | -0.419 | 0.077 | -- | 0.341 | -- | -0.0105 | 0.147 | -- | -- | -- | -- |
| 191.45 | 0.648 | 3.46 | -0.434 | 0.0828 | -- | -- | -- | -0.0129 | 1.71 | -- | -- | -- | -- |
| 186.94 | 0.637 | 3.43 | -0.588 | -- | -0.636 | -- | -- | 0.132 | -- | 1.818 | 2094 | -- | -- |
| 194.34 | 0.649 | 3.43 | -- | 0.109 | -0.394 | -- | -- | 0.133 | 23.1 | 1.899 | 2146 | -- | -- |
| 191.87 | 0.647 | 3.46 | -0.43 | -- | -- | -- | -- | -0.011 | -- | -- | -- | -- | -- |
| 196.41 | 0.656 | 3.45 | -- | 0.075 | -- | -- | -- | 0.0354 | 1.54 | -- | -- | -- | -- |
| 194.96 | 0.65 | 3.43 | -- | -- | -0.358 | -- | -- | 0.128 | -- | 1.857 | 2129 | -- | -- |
| 196.76 | 0.655 | 3.45 | -- | -- | -- | -- | -- | 0.0367 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 180.60 | radiation | 10.0 | 90 | < th | dose independent | rect. | 10 | 1 |
| 3 | 181.40 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 21 | 5 |
| 7 | 181.68 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 9 | 181.87 | wind | 1.0 | 4320 | < th | dose dependent | rect. | 2 | 4 |
| 10 | 181.92 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 10 | 1 |
| 13 | 182.29 | atmosphere | 1000.0 | 10 | > th | dose dependent | rect. | 1 | 10 |
| 21 | 182.52 | humidity | 80.0 | 270 | < th | dose dependent | rect. | 21 | 2 |
| 22 | 182.55 | wind | 1.0 | 4320 | < th | dose independent | rect. | 2 | 4 |
| 27 | 182.64 | humidity | 80.0 | 270 | < th | dose dependent | rect. | 21 | 5 |
| 34 | 182.77 | humidity | 80.0 | 270 | < th | dose dependent | rect. | 21 | 9 |
| 37 | 182.84 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 38 | 182.85 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 1 | 10 |
| 40 | 182.86 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 21 | 8 |
| 46 | 182.94 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 21 | 6 |
| 54 | 183.05 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 15 | 4 |
| 58 | 183.07 | wind | 7.0 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 60 | 183.08 | wind | 1.0 | 4320 | > th | dose independent | rect. | 2 | 4 |
| 62 | 183.13 | atmosphere | 1000.0 | 270 | > th | dose dependent | rect. | 24 | 7 |
| 74 | 183.27 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 14 | 6 |
| 84 | 183.30 | humidity | 70.0 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 89 | 183.33 | wind | 7.0 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 96 | 183.40 | humidity | 80.0 | 270 | < th | dose dependent | rect. | 20 | 11 |
| 102 | 183.46 | temperature | 25.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 104 | 183.46 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 4 |
| 115 | 183.54 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 4 | 1 |
| 130 | 183.63 | humidity | 70.0 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 132 | 183.65 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 12 | 8 |
| 151 | 183.76 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 18 | 1 |
| 166 | 183.84 | atmosphere | 1010.0 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 167 | 183.85 | humidity | 80.0 | 270 | < th | dose independent | rect. | 21 | 1 |
| 168 | 183.85 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 7 | 2 |
| 169 | 183.85 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 5 | 23 |
| 170 | 183.85 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 174 | 183.86 | humidity | 80.0 | 270 | > th | dose independent | rect. | 19 | 12 |
| 176 | 183.87 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 4 | 1 |
| 204 | 184.00 | humidity | 70.0 | 270 | < th | dose independent | rect. | 8 | 1 |
| 214 | 184.03 | humidity | 90.0 | 10 | < th | dose independent | rect. | 4 | 1 |
| 230 | 184.09 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 3 | 6 |
| 233 | 184.10 | wind | 9.0 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 248 | 184.14 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 249 | 184.14 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 252 | 184.15 | wind | 1.0 | 90 | < th | dose independent | rect. | 9 | 2 |
| 253 | 184.15 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 5 | 6 |
| 310 | 184.16 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 10 |
| 319 | 184.17 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 6 | 3 |
| 327 | 184.18 | humidity | 80.0 | 270 | > th | dose independent | rect. | 20 | 2 |
| 342 | 184.20 | humidity | 80.0 | 270 | < th | dose independent | rect. | 21 | 10 |
| 353 | 184.22 | wind | 1.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 374 | 184.26 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 6 | 3 |
| 432 | 184.31 | atmosphere | 1010.0 | 43200 | < th | dose dependent | sin | 3 | NA |
| 443 | 184.32 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 5 | 7 |
| 502 | 184.35 | wind | 9.0 | 10 | < th | dose dependent | rect. | 21 | 15 |
| 544 | 184.38 | atmosphere | 1010.0 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 609 | 184.42 | wind | 9.0 | 30 | < th | dose independent | rect. | 5 | 23 |
| 622 | 184.42 | atmosphere | 1010.0 | 43200 | < th | dose dependent | rect. | 6 | 18 |
| 684 | 184.44 | atmosphere | 1010.0 | 43200 | < th | dose dependent | no | NA | NA |
| 742 | 184.45 | atmosphere | 1010.0 | 43200 | < th | dose dependent | rect. | 10 | 23 |
| 746 | 184.46 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 20 | 13 |
| 747 | 184.46 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 5 | 23 |
| 772 | 184.47 | radiation | 20.0 | 10 | < th | dose independent | rect. | 1 | 12 |
| 781 | 184.47 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 20 | 13 |
| 850 | 184.51 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 24 | 9 |
| 922 | 184.55 | wind | 1.0 | 4320 | > th | dose independent | rect. | 3 | 7 |
| 953 | 184.56 | wind | 3.0 | 4320 | < th | dose dependent | rect. | 16 | 14 |
| 957 | 184.57 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 997 | 184.58 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 998 | 184.58 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 14 | 6 |