Os04g0480500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine rich repeat, N-terminal domain containing protein.
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Os04g0480500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine rich repeat, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 164.98 | 0.603 | 7.77 | 3.19 | 0.636 | 2.78 | 0.133 | -2.25 | 0.347 | 5.16 | 25 | 10672 | 21.5 | -- |
| 165.89 | 0.6 | 7.77 | 3.5 | 0.607 | 2.86 | 0.223 | -- | 0.104 | 5.15 | 24.95 | 13458 | 22.1 | -- |
| 160.68 | 0.59 | 7.85 | 2.95 | 0.554 | 2.77 | -- | -2.47 | 0.111 | 5.04 | 25.06 | 11892 | 22.3 | -- |
| 165.94 | 0.6 | 7.76 | 3.51 | 0.613 | 2.87 | -- | -- | 0.105 | 5.08 | 24.95 | 13458 | 21.9 | -- |
| 173.95 | 0.614 | 7.85 | 2.92 | -- | 2.79 | -- | -2.8 | 0.139 | -- | 25.1 | 11770 | 23.2 | -- |
| 390.68 | 0.927 | 7.44 | 5.5 | 0.572 | -- | 0.182 | -- | 1.57 | 5.01 | -- | -- | -- | -- |
| 390.77 | 0.926 | 7.44 | 5.5 | 0.573 | -- | -- | -- | 1.57 | 4.98 | -- | -- | -- | -- |
| 179.08 | 0.623 | 7.78 | 3.57 | -- | 2.85 | -- | -- | 0.116 | -- | 24.7 | 13073 | 22.6 | -- |
| 173.97 | 0.614 | 7.92 | -- | 0.331 | 4.63 | -- | -- | -0.571 | 4.64 | 20.92 | 43209 | 20.6 | -- |
| 408.03 | 0.944 | 7.44 | 5.52 | -- | -- | -- | -- | 1.59 | -- | -- | -- | -- | -- |
| 1188.77 | 1.61 | 7.57 | -- | 0.673 | -- | -- | -- | 0.959 | 4.71 | -- | -- | -- | -- |
| 182.74 | 0.63 | 7.9 | -- | -- | 4.98 | -- | -- | -0.429 | -- | 20.39 | 47520 | 20.5 | -- |
| 1212.77 | 1.63 | 7.58 | -- | -- | -- | -- | -- | 0.974 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 150.94 | temperature | 10 | 14400 | > th | dose dependent | rect. | 23 | 16 |
| 25 | 151.21 | temperature | 10 | 14400 | > th | dose dependent | sin | 5 | NA |
| 26 | 151.21 | temperature | 10 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 30 | 151.26 | temperature | 30 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 84 | 151.69 | temperature | 10 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 90 | 151.75 | temperature | 30 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 129 | 152.00 | temperature | 10 | 14400 | > th | dose dependent | rect. | 4 | 6 |
| 147 | 152.08 | temperature | 30 | 14400 | < th | dose dependent | rect. | 1 | 11 |
| 150 | 152.09 | temperature | 30 | 14400 | < th | dose dependent | rect. | 2 | 9 |
| 153 | 152.12 | temperature | 30 | 14400 | < th | dose dependent | rect. | 4 | 6 |
| 155 | 152.12 | temperature | 30 | 14400 | < th | dose dependent | rect. | 23 | 13 |
| 203 | 152.29 | temperature | 30 | 14400 | < th | dose dependent | sin | 6 | NA |
| 271 | 152.57 | temperature | 15 | 14400 | > th | dose dependent | rect. | 9 | 22 |
| 290 | 152.65 | temperature | 15 | 14400 | > th | dose dependent | no | NA | NA |
| 327 | 152.73 | temperature | 15 | 14400 | > th | dose dependent | rect. | 14 | 23 |
| 339 | 152.76 | temperature | 15 | 14400 | > th | dose dependent | rect. | 4 | 23 |
| 435 | 153.05 | temperature | 15 | 14400 | > th | dose dependent | rect. | 11 | 2 |
| 836 | 154.26 | temperature | 30 | 14400 | < th | dose dependent | no | NA | NA |
| 841 | 154.26 | temperature | 30 | 14400 | < th | dose dependent | rect. | 9 | 23 |
| 926 | 154.46 | temperature | 30 | 14400 | < th | dose dependent | rect. | 4 | 23 |
| 990 | 154.61 | temperature | 30 | 14400 | < th | dose dependent | rect. | 23 | 1 |