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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0479000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to HPV16 E1 protein binding protein (Thyroid hormone receptor interactor 13) (TRIP13 protein).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.46 (0.032) R2 : 0.46
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.79 (0.0911) R2dE : 0.463 R2E : 0.45
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.171 (0.0677) R2dN8 : 0.00981 R2N8 : -0.00386
σ : 0.601
deviance : 166.71
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 28.67
memory length : 381
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
146.36 0.568 3.39 0.745 0.694 -1.16 0.367 -3.37 0.0697 17 29.4 339 -- --
149.11 0.569 3.42 0.385 0.682 -1.55 0.607 -- 0.0409 16.6 29.5 379 -- --
146.45 0.564 3.39 0.792 0.683 -1.14 -- -3.71 0.0678 17.1 29.2 334 -- --
150.16 0.571 3.4 0.381 0.676 -1.58 -- -- 0.074 16.9 29.6 356 -- --
156.72 0.583 3.39 0.81 -- -1.48 -- -3.87 -0.00701 -- 28.5 348 -- --
200.2 0.663 3.43 0.583 1.33 -- 1.52 -- 0.0443 17.1 -- -- -- --
206 0.672 3.43 0.584 1.35 -- -- -- 0.0514 17.2 -- -- -- --
165.02 0.598 3.45 0.256 -- -1.77 -- -- -0.139 -- 28.64 381 -- --
153.02 0.576 3.43 -- 0.674 -1.64 -- -- 0.0178 16.9 29.7 356 -- --
300.74 0.81 3.41 0.536 -- -- -- -- 0.0174 -- -- -- -- --
214.97 0.686 3.44 -- 1.34 -- -- -- -0.0136 17.2 -- -- -- --
166.71 0.601 3.46 -- -- -1.79 -- -- -0.171 -- 28.67 381 -- --
308.32 0.82 3.43 -- -- -- -- -- -0.042 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 146.56 temperature 25 270 > th dose dependent rect. 9 11
17 147.80 temperature 25 270 > th dose dependent rect. 9 20
24 147.99 temperature 25 270 > th dose dependent rect. 4 16
28 148.01 temperature 25 270 > th dose dependent rect. 1 19
48 148.28 temperature 25 270 > th dose dependent sin 21 NA
122 149.29 temperature 25 270 > th dose dependent no NA NA
134 150.14 temperature 30 270 < th dose independent rect. 4 23
135 150.14 temperature 25 270 > th dose dependent rect. 13 23
136 150.17 temperature 25 270 > th dose dependent rect. 15 23
143 150.34 temperature 30 270 < th dose independent rect. 16 23
175 151.62 temperature 30 270 > th dose independent rect. 15 23
176 151.63 temperature 30 270 < th dose independent no NA NA
188 151.89 temperature 30 270 > th dose independent rect. 9 10
202 151.93 temperature 30 270 < th dose independent rect. 12 23
205 152.05 temperature 30 270 > th dose independent rect. 13 23
207 152.18 temperature 30 270 > th dose independent no NA NA
304 152.30 temperature 30 270 < th dose independent sin 21 NA
313 152.51 temperature 25 720 > th dose dependent rect. 8 4
342 153.03 temperature 30 270 > th dose independent sin 22 NA
350 153.19 temperature 30 270 < th dose independent rect. 10 23
409 153.89 temperature 30 720 > th dose independent rect. 9 3
430 154.18 temperature 30 720 > th dose independent rect. 18 18
477 154.75 temperature 30 720 > th dose dependent rect. 18 18
481 154.80 temperature 30 720 > th dose independent sin 9 NA
492 155.00 temperature 30 720 > th dose dependent sin 9 NA
497 155.02 temperature 30 270 < th dose independent rect. 6 15
504 155.18 temperature 30 270 < th dose independent rect. 9 14
531 155.37 temperature 25 720 > th dose dependent sin 4 NA
593 155.66 temperature 30 720 < th dose independent rect. 5 10
598 155.69 temperature 30 720 < th dose independent rect. 7 8
613 155.70 temperature 30 720 < th dose independent sin 5 NA
639 155.87 temperature 30 720 < th dose independent rect. 9 7
651 155.95 temperature 30 720 < th dose independent rect. 5 8
664 156.10 temperature 30 720 < th dose independent rect. 23 17
756 156.55 temperature 30 270 < th dose dependent sin 21 NA
847 156.98 temperature 30 270 < th dose dependent rect. 10 11
852 157.03 temperature 30 720 < th dose independent rect. 1 15
861 157.09 temperature 30 270 < th dose independent rect. 22 23