Os04g0478600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0478600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 132.44 | 0.541 | 6.86 | -0.964 | 1.29 | -1.37 | 0.0568 | 2.22 | -0.524 | 8.75 | 45.59 | 1009 | -- | -- |
| 137.48 | 0.546 | 6.86 | -0.812 | 1.27 | -1.21 | 0.622 | -- | -0.517 | 8.74 | 51 | 994 | -- | -- |
| 132.45 | 0.536 | 6.86 | -0.961 | 1.29 | -1.35 | -- | 2.26 | -0.527 | 8.74 | 47.6 | 1005 | -- | -- |
| 138.71 | 0.549 | 6.84 | -0.764 | 1.33 | -1.18 | -- | -- | -0.492 | 8.61 | 52 | 959 | -- | -- |
| 188.68 | 0.64 | 6.89 | -0.965 | -- | -1.02 | -- | 1.82 | -0.521 | -- | 32.93 | 1377 | -- | -- |
| 159.28 | 0.592 | 6.85 | -0.727 | 0.979 | -- | 0.405 | -- | -0.458 | 7.91 | -- | -- | -- | -- |
| 159.75 | 0.592 | 6.85 | -0.717 | 0.98 | -- | -- | -- | -0.459 | 7.86 | -- | -- | -- | -- |
| 193.33 | 0.648 | 6.88 | -0.75 | -- | -0.861 | -- | -- | -0.487 | -- | 53 | 1392 | -- | -- |
| 153.85 | 0.578 | 6.83 | -- | 1.41 | -1.16 | -- | -- | -0.426 | 8.49 | 59.5 | 887 | -- | -- |
| 211.86 | 0.68 | 6.87 | -0.706 | -- | -- | -- | -- | -0.445 | -- | -- | -- | -- | -- |
| 173.29 | 0.616 | 6.83 | -- | 0.975 | -- | -- | -- | -0.379 | 7.91 | -- | -- | -- | -- |
| 207.99 | 0.672 | 6.86 | -- | -- | -0.846 | -- | -- | -0.415 | -- | 57.21 | 1401 | -- | -- |
| 225 | 0.7 | 6.85 | -- | -- | -- | -- | -- | -0.367 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 130.73 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 9 |
| 2 | 130.81 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 12 |
| 6 | 130.82 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 15 |
| 13 | 131.18 | humidity | 80 | 1440 | < th | dose independent | rect. | 2 | 13 |
| 17 | 131.35 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 9 |
| 43 | 131.91 | radiation | 10 | 1440 | < th | dose dependent | sin | 20 | NA |
| 48 | 132.11 | humidity | 80 | 1440 | > th | dose independent | rect. | 1 | 14 |
| 49 | 132.12 | humidity | 80 | 1440 | < th | dose independent | sin | 3 | NA |
| 81 | 132.62 | humidity | 80 | 1440 | > th | dose independent | rect. | 5 | 11 |
| 91 | 132.83 | humidity | 80 | 1440 | > th | dose independent | sin | 2 | NA |
| 104 | 132.99 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 10 |
| 197 | 133.67 | radiation | 10 | 1440 | > th | dose independent | sin | 21 | NA |
| 227 | 133.87 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 20 |
| 258 | 134.03 | humidity | 80 | 1440 | > th | dose independent | rect. | 1 | 20 |
| 264 | 134.06 | humidity | 80 | 1440 | < th | dose independent | rect. | 2 | 18 |
| 268 | 134.09 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 7 |
| 302 | 134.18 | humidity | 80 | 1440 | < th | dose independent | rect. | 5 | 15 |
| 308 | 134.21 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 314 | 134.30 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 316 | 134.33 | humidity | 80 | 1440 | > th | dose independent | rect. | 5 | 16 |
| 319 | 134.34 | humidity | 80 | 720 | < th | dose dependent | sin | 11 | NA |
| 389 | 134.59 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 410 | 134.66 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 488 | 134.72 | humidity | 60 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 512 | 134.91 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 515 | 134.91 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 528 | 134.96 | humidity | 90 | 720 | < th | dose dependent | rect. | 14 | 19 |
| 537 | 135.02 | humidity | 90 | 720 | < th | dose dependent | rect. | 12 | 23 |
| 546 | 135.06 | humidity | 50 | 720 | > th | dose dependent | rect. | 24 | 23 |
| 594 | 135.26 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 5 |
| 605 | 135.31 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 22 |
| 617 | 135.38 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 5 |
| 656 | 135.57 | humidity | 80 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 708 | 135.73 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 723 | 135.82 | humidity | 80 | 720 | > th | dose independent | rect. | 17 | 21 |
| 732 | 135.83 | humidity | 50 | 720 | > th | dose dependent | rect. | 11 | 23 |
| 763 | 135.92 | humidity | 90 | 1440 | < th | dose dependent | rect. | 2 | 19 |
| 776 | 135.98 | humidity | 90 | 1440 | < th | dose dependent | sin | 23 | NA |
| 778 | 135.98 | humidity | 90 | 1440 | < th | dose dependent | rect. | 2 | 15 |
| 795 | 136.03 | humidity | 50 | 720 | > th | dose dependent | rect. | 9 | 23 |
| 804 | 136.06 | humidity | 50 | 720 | > th | dose dependent | no | NA | NA |
| 807 | 136.06 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 819 | 136.08 | humidity | 90 | 1440 | < th | dose dependent | rect. | 9 | 12 |
| 839 | 136.12 | humidity | 50 | 720 | > th | dose dependent | rect. | 13 | 23 |
| 887 | 136.24 | humidity | 50 | 1440 | > th | dose dependent | rect. | 9 | 12 |
| 959 | 136.39 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 975 | 136.41 | humidity | 80 | 1440 | < th | dose dependent | rect. | 18 | 22 |
| 979 | 136.43 | humidity | 80 | 720 | > th | dose independent | rect. | 12 | 22 |
| 999 | 136.47 | humidity | 90 | 720 | < th | dose dependent | rect. | 16 | 8 |