Os04g0478000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0478000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.78 | 0.243 | 14.1 | 0.485 | 0.496 | -1.09 | -0.131 | 0.72 | 0.663 | 20 | 26.65 | 1842 | -- | -- |
| 27.15 | 0.243 | 14 | 0.629 | 0.514 | -1.18 | -0.147 | -- | 0.699 | 20.1 | 25.26 | 1790 | -- | -- |
| 26.82 | 0.241 | 14.1 | 0.471 | 0.491 | -1.08 | -- | 0.798 | 0.659 | 20.1 | 27.07 | 1847 | -- | -- |
| 27.22 | 0.243 | 14 | 0.636 | 0.525 | -1.19 | -- | -- | 0.706 | 20.1 | 24.96 | 1773 | -- | -- |
| 32.06 | 0.264 | 14.1 | 0.415 | -- | -1.32 | -- | 1.8 | 0.68 | -- | 29.95 | 598 | -- | -- |
| 47.3 | 0.322 | 14 | 1.02 | 0.543 | -- | -0.114 | -- | 0.967 | 20.1 | -- | -- | -- | -- |
| 47.34 | 0.322 | 14 | 1.02 | 0.543 | -- | -- | -- | 0.966 | 20.1 | -- | -- | -- | -- |
| 31.27 | 0.26 | 14 | 0.657 | -- | -1.37 | -- | -- | 0.678 | -- | 28.5 | 564 | -- | -- |
| 29.95 | 0.255 | 14 | -- | 0.561 | -1.17 | -- | -- | 0.63 | 20.1 | 20.54 | 27636 | -- | -- |
| 63.53 | 0.372 | 14 | 1.02 | -- | -- | -- | -- | 0.96 | -- | -- | -- | -- | -- |
| 75 | 0.405 | 14 | -- | 0.537 | -- | -- | -- | 0.852 | 20.2 | -- | -- | -- | -- |
| 41.36 | 0.3 | 14.1 | -- | -- | -1.61 | -- | -- | 0.555 | -- | 28.4 | 584 | -- | -- |
| 90.95 | 0.445 | 14 | -- | -- | -- | -- | -- | 0.847 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.30 | temperature | 30 | 720 | < th | dose dependent | rect. | 10 | 19 |
| 7 | 26.51 | temperature | 30 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 9 | 26.54 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 12 | 26.57 | temperature | 10 | 1440 | > th | dose dependent | rect. | 22 | 1 |
| 15 | 26.67 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 55 | 26.99 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 8 |
| 56 | 26.99 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 16 |
| 61 | 27.00 | temperature | 10 | 1440 | > th | dose dependent | rect. | 19 | 8 |
| 62 | 27.00 | temperature | 10 | 1440 | > th | dose dependent | rect. | 19 | 10 |
| 65 | 27.02 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 10 |
| 98 | 27.08 | temperature | 10 | 1440 | > th | dose dependent | rect. | 19 | 15 |
| 124 | 27.11 | temperature | 30 | 1440 | < th | dose dependent | sin | 10 | NA |
| 197 | 27.17 | temperature | 10 | 1440 | > th | dose dependent | sin | 10 | NA |
| 445 | 27.39 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 21 |
| 637 | 27.58 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 765 | 27.69 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |