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Os04g0477200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.78 (0.028) R2 : 0.782
β1 : 1.99 (0.103) R2dD : 0.187 R2D : 0.135
β2 : 2.54 (0.0709) R2dC : 0.614 R2C : 0.581
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.493 (0.0598) R2dN8 : 0.0436 R2N8 : -0.00456
σ : 0.526
deviance : 126.37
__
_____
C
peak time of C : 15.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
110.21 0.493 7.71 2.53 2.54 -0.359 0.0305 -3.71 0.612 15.8 22.98 1072 -- --
117.78 0.505 7.77 2.29 2.49 1.15 -0.492 -- 0.611 15.8 15.2 2146 -- --
110.19 0.489 7.71 2.57 2.54 -0.303 -- -3.64 0.623 15.8 23.4 1069 -- --
117.17 0.504 7.77 2.22 2.53 1.52 -- -- 0.549 15.8 14.87 2102 -- --
459.97 0.999 7.7 2.43 -- 0.494 -- -2.9 0.604 -- 21.6 1032 -- --
125.73 0.526 7.78 2 2.54 -- -0.465 -- 0.495 15.8 -- -- -- --
126.37 0.526 7.78 1.99 2.54 -- -- -- 0.493 15.8 -- -- -- --
460.84 1 7.77 2.42 -- 1.99 -- -- 0.53 -- 18.7 981 -- --
187.51 0.638 7.77 -- 2.63 -1.12 -- -- 0.244 16 10.48 11392 -- --
481.3 1.03 7.78 1.89 -- -- -- -- 0.425 -- -- -- -- --
230.86 0.711 7.83 -- 2.5 -- -- -- 0.271 15.8 -- -- -- --
511.26 1.05 7.9 -- -- -1.3 -- -- -0.125 -- 23.4 47520 -- --
575.11 1.12 7.83 -- -- -- -- -- 0.216 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 100.36 temperature 25.0 270 < th dose independent rect. 1 6
2 100.73 temperature 15.0 270 > th dose independent rect. 11 10
4 101.07 temperature 15.0 270 > th dose independent rect. 14 16
5 101.24 radiation 40.0 90 < th dose dependent rect. 3 7
6 101.26 radiation 30.0 270 < th dose dependent rect. 1 8
10 101.68 temperature 30.0 90 < th dose dependent rect. 3 6
14 101.75 temperature 15.0 270 > th dose independent rect. 24 22
18 101.94 temperature 25.0 270 < th dose independent rect. 3 2
19 102.03 radiation 30.0 90 < th dose independent rect. 3 6
30 102.54 atmosphere 1010.0 270 < th dose independent rect. 11 10
31 102.55 precipitation 0.1 90 < th dose independent rect. 3 5
32 102.55 precipitation 0.1 90 < th dose dependent rect. 3 5
36 102.72 precipitation 0.1 270 < th dose independent rect. 1 6
37 102.72 precipitation 0.1 270 < th dose dependent rect. 1 6
40 102.74 radiation 20.0 270 < th dose independent rect. 1 7
41 102.75 temperature 30.0 270 < th dose dependent rect. 3 2
43 102.78 wind 5.0 90 < th dose independent rect. 3 5
46 102.84 temperature 10.0 90 > th dose dependent rect. 8 19
51 102.96 precipitation 0.1 10 < th dose independent rect. 3 6
52 102.96 precipitation 0.1 10 < th dose dependent rect. 3 6
61 103.13 atmosphere 1010.0 270 < th dose independent rect. 14 16
64 103.15 temperature 10.0 90 > th dose independent rect. 3 5
67 103.15 humidity 50.0 90 > th dose independent rect. 3 5
69 103.15 atmosphere 995.0 90 > th dose independent rect. 3 5
70 103.15 atmosphere 1015.0 90 < th dose independent rect. 3 5
71 103.15 temperature 10.0 90 > th dose independent rect. 8 19
73 103.18 precipitation 0.1 90 < th dose independent rect. 8 19
75 103.18 precipitation 0.1 90 < th dose dependent rect. 8 19
76 103.19 wind 7.0 270 < th dose independent rect. 1 6
79 103.20 wind 9.0 270 < th dose independent rect. 7 18
85 103.28 radiation 10.0 270 < th dose dependent rect. 1 18
90 103.34 precipitation 0.1 10 < th dose independent rect. 9 18
91 103.34 precipitation 0.1 10 < th dose dependent rect. 9 18
92 103.36 humidity 70.0 270 > th dose independent rect. 1 6
97 103.40 temperature 30.0 270 < th dose dependent rect. 1 5
104 103.45 temperature 10.0 270 > th dose independent rect. 1 6
107 103.45 humidity 50.0 270 > th dose independent rect. 1 6
109 103.45 atmosphere 995.0 270 > th dose independent rect. 1 6
110 103.45 atmosphere 1015.0 270 < th dose independent rect. 1 6
118 103.57 temperature 10.0 10 > th dose dependent rect. 8 19
119 103.58 precipitation 0.1 270 < th dose independent rect. 3 2
120 103.58 precipitation 0.1 270 < th dose dependent rect. 3 2
122 103.59 humidity 70.0 90 > th dose dependent rect. 22 5
125 103.60 wind 9.0 90 < th dose dependent rect. 3 5
128 103.61 wind 9.0 10 < th dose dependent rect. 3 6
130 103.63 humidity 50.0 270 > th dose dependent rect. 20 5
162 103.80 wind 7.0 10 < th dose independent rect. 3 6
185 104.04 temperature 10.0 10 > th dose independent rect. 3 6
187 104.04 temperature 30.0 10 < th dose independent rect. 3 6
188 104.04 humidity 50.0 10 > th dose independent rect. 3 6
190 104.04 atmosphere 995.0 10 > th dose independent rect. 3 6
191 104.04 atmosphere 1015.0 10 < th dose independent rect. 3 6
192 104.04 temperature 10.0 10 > th dose independent rect. 9 18
206 104.12 atmosphere 1015.0 1440 < th dose independent rect. 3 7
209 104.13 humidity 70.0 270 > th dose dependent rect. 22 2
222 104.20 wind 9.0 10 < th dose independent rect. 9 18
254 104.31 wind 5.0 270 < th dose independent rect. 3 2
256 104.32 atmosphere 995.0 270 > th dose dependent rect. 22 2
257 104.33 wind 1.0 270 > th dose independent rect. 1 5
263 104.36 wind 9.0 270 < th dose independent rect. 5 22
267 104.37 radiation 10.0 10 < th dose independent rect. 3 19
269 104.38 wind 9.0 90 < th dose dependent rect. 8 19
272 104.39 humidity 60.0 10 > th dose dependent rect. 22 5
276 104.43 wind 1.0 270 > th dose independent rect. 11 10
283 104.46 atmosphere 995.0 270 > th dose dependent rect. 20 5
294 104.50 humidity 80.0 90 > th dose independent rect. 22 5
300 104.52 atmosphere 995.0 10 > th dose dependent rect. 22 5
352 104.64 precipitation 0.1 270 < th dose independent rect. 1 19
354 104.64 precipitation 0.1 270 < th dose dependent rect. 1 19
356 104.65 temperature 10.0 270 > th dose independent rect. 3 2
359 104.65 humidity 50.0 270 > th dose independent rect. 3 2
362 104.65 atmosphere 995.0 270 > th dose independent rect. 3 2
363 104.65 atmosphere 1010.0 270 < th dose independent rect. 3 2
365 104.65 radiation 20.0 270 < th dose independent rect. 3 2
368 104.65 temperature 10.0 270 > th dose independent rect. 5 22
375 104.68 humidity 50.0 270 > th dose independent rect. 21 14
376 104.68 radiation 40.0 270 < th dose dependent rect. 3 2
393 104.70 temperature 10.0 270 > th dose independent rect. 21 14
394 104.70 atmosphere 995.0 270 > th dose independent rect. 21 14
396 104.70 radiation 20.0 10 < th dose dependent rect. 3 19
400 104.74 temperature 15.0 90 > th dose independent rect. 3 19
402 104.78 radiation 1.0 270 < th dose independent rect. 3 2
415 104.79 atmosphere 995.0 270 > th dose independent rect. 1 19
421 104.81 precipitation 0.1 270 < th dose independent rect. 20 5
425 104.81 precipitation 0.1 270 < th dose dependent rect. 20 5
430 104.84 wind 9.0 270 < th dose independent rect. 21 14
436 104.87 wind 5.0 270 < th dose independent rect. 20 5
451 104.92 temperature 15.0 10 > th dose independent rect. 16 16
492 105.03 radiation 1.0 270 < th dose independent rect. 1 18
508 105.10 atmosphere 1015.0 270 < th dose independent rect. 1 20
510 105.11 temperature 10.0 270 > th dose independent rect. 20 5
511 105.11 temperature 30.0 270 < th dose independent rect. 20 5
512 105.11 humidity 50.0 270 > th dose independent rect. 20 5
515 105.11 atmosphere 995.0 270 > th dose independent rect. 20 5
516 105.11 radiation 1.0 270 < th dose independent rect. 20 5
524 105.11 radiation 1.0 270 < th dose dependent rect. 20 5
533 105.14 humidity 80.0 270 > th dose independent rect. 21 3
534 105.14 wind 5.0 90 < th dose independent rect. 22 5
537 105.14 humidity 50.0 90 > th dose dependent rect. 3 6
555 105.23 wind 5.0 270 < th dose independent rect. 22 2
559 105.26 precipitation 0.1 270 < th dose independent rect. 5 22
560 105.26 precipitation 0.1 270 < th dose dependent rect. 5 22
568 105.30 wind 9.0 270 < th dose dependent rect. 3 2
613 105.39 atmosphere 995.0 90 > th dose dependent rect. 3 5
615 105.40 atmosphere 995.0 90 > th dose independent rect. 3 19
625 105.44 wind 1.0 270 > th dose independent rect. 3 1
629 105.45 precipitation 0.1 10 < th dose independent rect. 3 19
630 105.45 precipitation 0.1 10 < th dose dependent rect. 3 19
642 105.50 atmosphere 995.0 10 > th dose dependent rect. 3 6
650 105.55 precipitation 0.1 90 < th dose independent rect. 22 5
651 105.55 precipitation 0.1 90 < th dose dependent rect. 22 5
655 105.56 radiation 30.0 270 < th dose independent rect. 15 15
663 105.59 temperature 10.0 90 > th dose independent rect. 22 5
664 105.59 temperature 30.0 90 < th dose independent rect. 22 5
665 105.59 humidity 50.0 90 > th dose independent rect. 22 5
668 105.59 atmosphere 995.0 90 > th dose independent rect. 22 5
669 105.59 radiation 1.0 90 < th dose independent rect. 22 5
675 105.59 atmosphere 1015.0 90 < th dose independent rect. 3 19
677 105.59 radiation 1.0 90 < th dose dependent rect. 22 5
691 105.63 wind 9.0 270 < th dose independent rect. 1 19
702 105.64 atmosphere 995.0 10 > th dose independent rect. 3 19
718 105.70 humidity 50.0 270 > th dose independent rect. 1 18
754 105.76 precipitation 0.1 270 < th dose independent rect. 11 10
759 105.76 precipitation 0.1 270 < th dose dependent rect. 11 10
761 105.77 atmosphere 995.0 270 > th dose independent rect. 11 9
801 105.82 radiation 40.0 270 < th dose dependent rect. 15 15
811 105.86 precipitation 0.1 10 < th dose independent rect. 22 5
825 105.86 precipitation 0.1 10 < th dose dependent rect. 22 5
842 105.90 wind 9.0 90 < th dose independent rect. 3 19
846 105.91 precipitation 0.1 270 < th dose independent rect. 21 14
850 105.91 precipitation 0.1 270 < th dose dependent rect. 21 14
853 105.92 temperature 15.0 270 > th dose independent rect. 10 22
876 105.94 temperature 10.0 10 > th dose independent rect. 22 5
877 105.94 temperature 30.0 10 < th dose independent rect. 22 5
878 105.94 humidity 50.0 10 > th dose independent rect. 22 5
881 105.94 atmosphere 995.0 10 > th dose independent rect. 22 5
883 105.94 radiation 1.0 10 < th dose independent rect. 22 5
889 105.94 temperature 10.0 10 > th dose independent rect. 3 19
891 105.94 atmosphere 1015.0 10 < th dose independent rect. 3 19
892 105.94 radiation 1.0 10 < th dose dependent rect. 22 5
903 105.95 wind 9.0 270 < th dose dependent rect. 20 5
907 105.96 humidity 50.0 270 > th dose independent rect. 14 16
909 105.96 wind 9.0 90 < th dose dependent rect. 22 5
932 106.02 temperature 10.0 270 > th dose independent rect. 6 8
933 106.02 atmosphere 995.0 270 > th dose independent rect. 6 8
934 106.02 atmosphere 1015.0 270 < th dose independent rect. 6 8
948 106.04 atmosphere 995.0 270 > th dose independent rect. 14 16
963 106.07 radiation 40.0 90 < th dose dependent rect. 3 19
965 106.08 precipitation 0.1 270 < th dose independent rect. 6 8
971 106.08 precipitation 0.1 270 < th dose dependent rect. 6 8
973 106.09 wind 1.0 270 > th dose independent rect. 7 18
999 106.17 wind 9.0 270 < th dose independent rect. 11 10