Os04g0476000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os04g0476000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.09 | 0.194 | 9.82 | 0.218 | 0.387 | -0.216 | -0.238 | -0.385 | 0.123 | 3.67 | 78 | 68 | -- | -- |
| 17.63 | 0.196 | 9.82 | 0.235 | 0.379 | -0.221 | 0.086 | -- | 0.127 | 3.6 | 77.66 | 72 | -- | -- |
| 17.2 | 0.193 | 9.82 | 0.225 | 0.383 | -0.218 | -- | -0.281 | 0.125 | 3.64 | 77.75 | 70 | -- | -- |
| 17.65 | 0.196 | 9.82 | 0.233 | 0.379 | -0.221 | -- | -- | 0.127 | 3.63 | 77.68 | 72 | -- | -- |
| 21.04 | 0.214 | 9.81 | 0.281 | -- | -0.411 | -- | -0.175 | 0.143 | -- | 77 | 105 | -- | -- |
| 19.83 | 0.209 | 9.82 | 0.216 | 0.589 | -- | 0.0871 | -- | 0.132 | 3.25 | -- | -- | -- | -- |
| 19.85 | 0.209 | 9.82 | 0.214 | 0.589 | -- | -- | -- | 0.132 | 3.26 | -- | -- | -- | -- |
| 21.28 | 0.215 | 9.82 | 0.265 | -- | -0.427 | -- | -- | 0.135 | -- | 78 | 100 | -- | -- |
| 19.08 | 0.203 | 9.83 | -- | 0.394 | -0.21 | -- | -- | 0.101 | 3.59 | 77.14 | 73 | -- | -- |
| 39.51 | 0.294 | 9.82 | 0.24 | -- | -- | -- | -- | 0.147 | -- | -- | -- | -- | -- |
| 21.06 | 0.215 | 9.83 | -- | 0.593 | -- | -- | -- | 0.108 | 3.26 | -- | -- | -- | -- |
| 22.86 | 0.223 | 9.83 | -- | -- | -0.424 | -- | -- | 0.119 | -- | 79 | 164 | -- | -- |
| 41.02 | 0.299 | 9.83 | -- | -- | -- | -- | -- | 0.121 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.64 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 20 |
| 2 | 16.68 | wind | 5 | 4320 | < th | dose independent | rect. | 20 | 7 |
| 3 | 16.71 | wind | 5 | 4320 | > th | dose independent | rect. | 20 | 7 |
| 9 | 16.89 | humidity | 80 | 90 | > th | dose independent | rect. | 5 | 20 |
| 16 | 16.96 | humidity | 80 | 90 | < th | dose independent | rect. | 22 | 20 |
| 19 | 16.98 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 22 | 16.99 | wind | 5 | 4320 | > th | dose dependent | rect. | 21 | 6 |
| 23 | 17.00 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 24 | 17.00 | humidity | 70 | 30 | > th | dose dependent | rect. | 6 | 19 |
| 31 | 17.04 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 1 |
| 45 | 17.09 | humidity | 80 | 90 | < th | dose independent | rect. | 19 | 23 |
| 56 | 17.16 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 5 |
| 61 | 17.17 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 4 |
| 69 | 17.19 | humidity | 80 | 90 | < th | dose independent | rect. | 9 | 22 |
| 94 | 17.24 | radiation | 30 | 90 | < th | dose dependent | rect. | 6 | 19 |
| 109 | 17.29 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 18 |
| 137 | 17.35 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 140 | 17.35 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 18 |
| 155 | 17.36 | humidity | 80 | 90 | > th | dose independent | rect. | 21 | 23 |
| 166 | 17.37 | wind | 5 | 4320 | > th | dose dependent | rect. | 20 | 8 |
| 178 | 17.39 | temperature | 25 | 10 | < th | dose independent | rect. | 24 | 6 |
| 205 | 17.42 | humidity | 80 | 90 | < th | dose independent | rect. | 9 | 9 |
| 206 | 17.42 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 12 |
| 215 | 17.43 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 9 |
| 225 | 17.43 | humidity | 70 | 30 | > th | dose dependent | rect. | 6 | 14 |
| 232 | 17.44 | humidity | 80 | 90 | > th | dose independent | rect. | 6 | 14 |
| 240 | 17.44 | radiation | 10 | 270 | < th | dose dependent | rect. | 3 | 21 |
| 252 | 17.46 | humidity | 80 | 90 | < th | dose independent | no | NA | NA |
| 264 | 17.47 | humidity | 80 | 90 | < th | dose independent | sin | 22 | NA |
| 268 | 17.47 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 13 |
| 273 | 17.47 | radiation | 20 | 90 | < th | dose independent | rect. | 6 | 18 |
| 281 | 17.48 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 293 | 17.49 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 9 |
| 300 | 17.49 | humidity | 80 | 90 | < th | dose independent | rect. | 3 | 23 |
| 315 | 17.50 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 16 |
| 324 | 17.51 | humidity | 80 | 270 | > th | dose independent | rect. | 4 | 14 |
| 349 | 17.52 | humidity | 80 | 90 | < th | dose independent | rect. | 5 | 23 |
| 404 | 17.55 | humidity | 80 | 90 | < th | dose independent | rect. | 11 | 23 |
| 426 | 17.56 | humidity | 70 | 90 | > th | dose dependent | sin | 21 | NA |
| 428 | 17.56 | temperature | 25 | 90 | < th | dose dependent | rect. | 24 | 11 |
| 434 | 17.57 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 13 |
| 455 | 17.58 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 11 |
| 470 | 17.58 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 9 |
| 478 | 17.59 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 483 | 17.59 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 11 |
| 485 | 17.59 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 13 |
| 513 | 17.60 | humidity | 80 | 1440 | < th | dose independent | rect. | 22 | 14 |
| 538 | 17.61 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 10 |
| 595 | 17.63 | temperature | 20 | 4320 | > th | dose independent | sin | 13 | NA |
| 597 | 17.63 | temperature | 20 | 720 | < th | dose independent | sin | 23 | NA |
| 604 | 17.63 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 12 |
| 632 | 17.63 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 8 |
| 644 | 17.64 | temperature | 20 | 1440 | > th | dose independent | sin | 1 | NA |
| 645 | 17.64 | humidity | 80 | 90 | > th | dose independent | sin | 22 | NA |
| 648 | 17.64 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 651 | 17.64 | wind | 7 | 1440 | > th | dose independent | rect. | 24 | 9 |
| 655 | 17.64 | wind | 7 | 1440 | < th | dose independent | rect. | 22 | 11 |
| 693 | 17.65 | temperature | 20 | 4320 | < th | dose independent | sin | 13 | NA |
| 732 | 17.65 | humidity | 80 | 90 | > th | dose independent | rect. | 15 | 23 |
| 749 | 17.66 | wind | 7 | 1440 | < th | dose independent | rect. | 24 | 9 |
| 778 | 17.66 | humidity | 80 | 90 | > th | dose independent | rect. | 17 | 22 |
| 789 | 17.66 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 14 |
| 849 | 17.68 | humidity | 80 | 90 | > th | dose independent | no | NA | NA |
| 878 | 17.68 | temperature | 20 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 887 | 17.68 | radiation | 20 | 90 | < th | dose dependent | rect. | 13 | 12 |
| 919 | 17.69 | radiation | 20 | 270 | < th | dose independent | rect. | 3 | 21 |
| 926 | 17.69 | temperature | 25 | 720 | < th | dose dependent | sin | 12 | NA |
| 935 | 17.69 | radiation | 20 | 90 | < th | dose dependent | rect. | 11 | 14 |
| 944 | 17.70 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 6 |
| 967 | 17.70 | humidity | 80 | 90 | > th | dose independent | rect. | 13 | 23 |
| 969 | 17.70 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 995 | 17.71 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 1 |