Os04g0475600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : 2OG-Fe(II) oxygenase domain containing protein.
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Os04g0475600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : 2OG-Fe(II) oxygenase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 90.22 | 0.446 | 8.94 | -0.478 | 1.94 | -0.707 | 0.335 | 1.73 | -0.544 | 8.78 | 29.38 | 1363 | -- | -- |
| 91.01 | 0.444 | 8.9 | -0.0423 | 1.93 | -0.571 | 0.349 | -- | -0.516 | 8.82 | 27.8 | 1350 | -- | -- |
| 90.57 | 0.443 | 8.94 | -0.48 | 1.94 | -0.714 | -- | 1.79 | -0.547 | 8.78 | 29.39 | 1354 | -- | -- |
| 91.32 | 0.445 | 8.89 | 0.000134 | 1.94 | -0.544 | -- | -- | -0.471 | 8.81 | 28.85 | 1343 | -- | -- |
| 302.49 | 0.81 | 8.97 | -0.284 | -- | -0.604 | -- | 1.27 | -0.447 | -- | 29.55 | 1440 | -- | -- |
| 105.16 | 0.481 | 8.87 | 0.174 | 1.92 | -- | 0.324 | -- | -0.389 | 8.67 | -- | -- | -- | -- |
| 105.5 | 0.481 | 8.87 | 0.184 | 1.92 | -- | -- | -- | -0.389 | 8.66 | -- | -- | -- | -- |
| 301.37 | 0.809 | 8.95 | 0.00795 | -- | -0.468 | -- | -- | -0.46 | -- | 27.99 | 1425 | -- | -- |
| 91.32 | 0.445 | 8.89 | -- | 1.93 | -0.544 | -- | -- | -0.472 | 8.81 | 28.85 | 1343 | -- | -- |
| 313.69 | 0.828 | 8.93 | 0.189 | -- | -- | -- | -- | -0.372 | -- | -- | -- | -- | -- |
| 106.4 | 0.483 | 8.88 | -- | 1.92 | -- | -- | -- | -0.409 | 8.66 | -- | -- | -- | -- |
| 301.28 | 0.808 | 8.95 | -- | -- | -0.507 | -- | -- | -0.477 | -- | 28 | 1424 | -- | -- |
| 314.63 | 0.828 | 8.93 | -- | -- | -- | -- | -- | -0.393 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 87.35 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 2 | 87.38 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 8 | 87.68 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 7 |
| 9 | 87.70 | humidity | 80 | 43200 | > th | dose independent | rect. | 2 | 2 |
| 29 | 87.86 | humidity | 80 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 40 | 87.90 | temperature | 20 | 270 | > th | dose dependent | rect. | 24 | 9 |
| 52 | 87.97 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 79 | 88.12 | wind | 5 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 114 | 88.33 | humidity | 80 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 126 | 88.38 | temperature | 25 | 1440 | > th | dose dependent | sin | 15 | NA |
| 145 | 88.47 | humidity | 80 | 43200 | < th | dose dependent | rect. | 2 | 5 |
| 165 | 88.58 | wind | 1 | 43200 | > th | dose dependent | rect. | 11 | 2 |
| 174 | 88.62 | humidity | 80 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 181 | 88.67 | wind | 3 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 187 | 88.69 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 6 |
| 191 | 88.74 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 192 | 88.74 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 5 |
| 235 | 88.93 | wind | 3 | 43200 | > th | dose independent | rect. | 9 | 4 |
| 256 | 89.05 | wind | 1 | 43200 | > th | dose dependent | rect. | 23 | 17 |
| 263 | 89.08 | wind | 1 | 43200 | > th | dose dependent | rect. | 3 | 13 |
| 265 | 89.09 | wind | 9 | 43200 | < th | dose dependent | rect. | 24 | 16 |
| 269 | 89.10 | wind | 5 | 43200 | < th | dose dependent | rect. | 9 | 4 |
| 270 | 89.10 | wind | 9 | 43200 | < th | dose dependent | rect. | 3 | 13 |
| 271 | 89.11 | wind | 3 | 43200 | < th | dose independent | rect. | 7 | 7 |
| 275 | 89.13 | temperature | 25 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 277 | 89.13 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 10 |
| 278 | 89.14 | temperature | 25 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 281 | 89.15 | wind | 5 | 43200 | < th | dose dependent | rect. | 8 | 6 |
| 285 | 89.16 | wind | 9 | 43200 | < th | dose dependent | rect. | 5 | 10 |
| 303 | 89.23 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 1 |
| 319 | 89.27 | wind | 1 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 329 | 89.29 | wind | 9 | 43200 | < th | dose dependent | rect. | 9 | 5 |
| 364 | 89.39 | wind | 1 | 43200 | > th | dose dependent | sin | 3 | NA |
| 374 | 89.41 | wind | 9 | 43200 | < th | dose dependent | sin | 3 | NA |
| 387 | 89.43 | wind | 3 | 43200 | > th | dose independent | rect. | 3 | 12 |
| 388 | 89.43 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 18 |
| 406 | 89.48 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 18 |
| 423 | 89.51 | wind | 3 | 43200 | < th | dose dependent | rect. | 24 | 4 |
| 434 | 89.53 | wind | 3 | 43200 | < th | dose independent | rect. | 3 | 11 |
| 456 | 89.58 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 6 |
| 468 | 89.61 | wind | 3 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 499 | 89.66 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 4 |
| 524 | 89.72 | wind | 3 | 43200 | > th | dose independent | sin | 4 | NA |
| 549 | 89.77 | wind | 3 | 43200 | < th | dose dependent | rect. | 24 | 12 |
| 550 | 89.78 | wind | 3 | 43200 | > th | dose independent | rect. | 24 | 15 |
| 552 | 89.79 | wind | 3 | 43200 | < th | dose independent | sin | 4 | NA |
| 630 | 89.93 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 20 |
| 697 | 90.04 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 22 |
| 819 | 90.29 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 820 | 90.30 | wind | 3 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 840 | 90.32 | wind | 3 | 43200 | < th | dose independent | sin | 9 | NA |
| 847 | 90.33 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 14 |
| 852 | 90.34 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 12 |
| 856 | 90.35 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 6 |
| 857 | 90.35 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 10 |
| 868 | 90.36 | wind | 3 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 870 | 90.36 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 8 |
| 872 | 90.36 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 18 |
| 877 | 90.37 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 886 | 90.37 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 891 | 90.38 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 11 |
| 895 | 90.38 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 13 |
| 903 | 90.39 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 9 |
| 976 | 90.50 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 990 | 90.51 | wind | 5 | 43200 | < th | dose dependent | rect. | 20 | 9 |
| 991 | 90.51 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 12 |