Os04g0475500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0475500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.71 | 0.289 | 11.2 | 0.361 | 0.867 | -1.57 | -1.18 | -1.73 | -0.0501 | 20.1 | 30.61 | 249 | -- | -- |
| 41.09 | 0.299 | 11.3 | 0.0778 | 0.938 | -1.78 | -1.08 | -- | -0.0809 | 20.3 | 77.23 | 156 | -- | -- |
| 41.57 | 0.3 | 11.2 | 0.375 | 0.904 | -1.52 | -- | -1.54 | -0.0572 | 20.1 | 30.19 | 226 | -- | -- |
| 44.69 | 0.311 | 11.2 | 0.127 | 0.96 | -1.71 | -- | -- | -0.0724 | 20.2 | 87.7 | 144 | -- | -- |
| 73.69 | 0.4 | 11.2 | 0.102 | -- | -2.25 | -- | -0.795 | -0.143 | -- | 56.7 | 414 | -- | -- |
| 72.93 | 0.4 | 11.2 | 0.471 | 1.23 | -- | -0.595 | -- | 0.166 | 18.8 | -- | -- | -- | -- |
| 73.79 | 0.402 | 11.2 | 0.482 | 1.23 | -- | -- | -- | 0.165 | 18.7 | -- | -- | -- | -- |
| 74.09 | 0.401 | 11.2 | -0.0306 | -- | -2.28 | -- | -- | -0.18 | -- | 73.79 | 426 | -- | -- |
| 45.07 | 0.313 | 11.3 | -- | 0.953 | -1.77 | -- | -- | -0.0937 | 20.3 | 93.71 | 144 | -- | -- |
| 152.42 | 0.577 | 11.2 | 0.454 | -- | -- | -- | -- | 0.14 | -- | -- | -- | -- | -- |
| 79.92 | 0.418 | 11.2 | -- | 1.22 | -- | -- | -- | 0.111 | 18.8 | -- | -- | -- | -- |
| 74.12 | 0.401 | 11.2 | -- | -- | -2.27 | -- | -- | -0.175 | -- | 78.84 | 426 | -- | -- |
| 157.86 | 0.586 | 11.2 | -- | -- | -- | -- | -- | 0.0901 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.65 | temperature | 20 | 270 | > th | dose dependent | sin | 4 | NA |
| 9 | 32.46 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 19 |
| 10 | 32.48 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 21 |
| 17 | 33.44 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 16 |
| 25 | 34.05 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 44 | 35.20 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 13 |
| 59 | 35.67 | temperature | 30 | 270 | < th | dose dependent | sin | 3 | NA |
| 73 | 36.05 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 15 |
| 75 | 36.06 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 86 | 36.40 | temperature | 25 | 270 | > th | dose independent | sin | 1 | NA |
| 114 | 36.81 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 163 | 37.42 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 10 |
| 181 | 37.59 | temperature | 20 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 211 | 37.88 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 12 |
| 214 | 37.89 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 217 | 37.91 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 224 | 37.96 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 23 |
| 230 | 38.00 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 232 | 38.02 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 245 | 38.20 | temperature | 25 | 270 | < th | dose independent | sin | 2 | NA |
| 315 | 38.69 | temperature | 20 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 351 | 38.90 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 474 | 39.61 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 14 |
| 578 | 40.12 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 605 | 40.28 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 9 |
| 777 | 41.16 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 11 |
| 810 | 41.34 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 15 |
| 817 | 41.37 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 21 |
| 841 | 41.49 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 18 |
| 861 | 41.56 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |