Os04g0475000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0475000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 259.97 | 0.758 | 4.37 | -0.957 | 1.53 | -3.89 | 2.71 | -1.59 | -0.0642 | 16.6 | 1.02 | 761 | -- | -- |
| 260.69 | 0.752 | 4.36 | -0.87 | 1.5 | -3.82 | 1.69 | -- | -0.0418 | 16.5 | 0.97 | 756 | -- | -- |
| 266.76 | 0.761 | 4.32 | -0.894 | 1.61 | -3.82 | -- | 1.28 | -0.0955 | 16 | 0.97 | 736 | -- | -- |
| 267.99 | 0.762 | 4.35 | -0.858 | 1.28 | -3.56 | -- | -- | -0.0432 | 16.4 | 0.9779 | 766 | -- | -- |
| 269.61 | 0.765 | 4.32 | -0.856 | -- | -2.48 | -- | 0.93 | -0.0215 | -- | 0.98 | 921 | -- | -- |
| 291.75 | 0.801 | 4.32 | -1.13 | 1.62 | -- | -0.468 | -- | -0.169 | 7.29 | -- | -- | -- | -- |
| 292.31 | 0.801 | 4.32 | -1.14 | 1.62 | -- | -- | -- | -0.167 | 7.35 | -- | -- | -- | -- |
| 270.51 | 0.766 | 4.33 | -0.944 | -- | -2.41 | -- | -- | -0.0547 | -- | 0.98 | 913 | -- | -- |
| 288.24 | 0.791 | 4.32 | -- | 1.31 | -3.63 | -- | -- | 0.0525 | 16.4 | 0.8581 | 770 | -- | -- |
| 432.07 | 0.971 | 4.35 | -1.11 | -- | -- | -- | -- | -0.141 | -- | -- | -- | -- | -- |
| 326.44 | 0.845 | 4.29 | -- | 1.61 | -- | -- | -- | -0.0407 | 7.4 | -- | -- | -- | -- |
| 293.42 | 0.798 | 4.31 | -- | -- | -2.51 | -- | -- | 0.0627 | -- | 0.9028 | 930 | -- | -- |
| 464.62 | 1.01 | 4.33 | -- | -- | -- | -- | -- | -0.0174 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 250.56 | radiation | 1.0 | 720 | < th | dose independent | rect. | 3 | 22 |
| 2 | 250.95 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 3 | 22 |
| 4 | 252.43 | radiation | 1.0 | 720 | > th | dose independent | rect. | 15 | 22 |
| 6 | 253.03 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 4 | 14 |
| 9 | 254.28 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 4 | 13 |
| 13 | 255.03 | atmosphere | 995.0 | 720 | > th | dose dependent | rect. | 4 | 2 |
| 16 | 255.42 | radiation | 1.0 | 720 | < th | dose independent | rect. | 7 | 18 |
| 20 | 255.85 | radiation | 1.0 | 720 | < th | dose independent | rect. | 4 | 14 |
| 25 | 256.42 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 4 | 12 |
| 31 | 256.67 | radiation | 1.0 | 720 | > th | dose independent | rect. | 7 | 11 |
| 45 | 256.89 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 2 | 3 |
| 48 | 256.95 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 4 | 2 |
| 49 | 256.96 | radiation | 1.0 | 720 | < th | dose independent | rect. | 13 | 12 |
| 55 | 257.21 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 11 | 17 |
| 62 | 257.59 | radiation | 1.0 | 720 | > th | dose independent | rect. | 15 | 4 |
| 75 | 257.80 | radiation | 1.0 | 720 | > th | dose independent | sin | 23 | NA |
| 78 | 257.92 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 7 | 18 |
| 85 | 258.13 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 2 | 3 |
| 89 | 258.21 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 11 | 16 |
| 141 | 259.28 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 13 | 12 |
| 144 | 259.37 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 154 | 259.58 | radiation | 1.0 | 720 | < th | dose independent | rect. | 7 | 23 |
| 158 | 259.74 | radiation | 1.0 | 720 | < th | dose independent | rect. | 19 | 23 |
| 159 | 259.78 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 166 | 259.95 | radiation | 1.0 | 720 | < th | dose independent | rect. | 17 | 8 |
| 184 | 260.55 | temperature | 25.0 | 270 | < th | dose independent | rect. | 11 | 22 |
| 189 | 260.70 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 17 | 8 |
| 212 | 260.94 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 221 | 261.12 | radiation | 1.0 | 720 | > th | dose independent | no | NA | NA |
| 269 | 261.17 | humidity | 80.0 | 720 | < th | dose independent | rect. | 9 | 9 |
| 270 | 261.19 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 23 | 6 |
| 272 | 261.21 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 273 | 261.22 | radiation | 1.0 | 720 | < th | dose independent | rect. | 10 | 23 |
| 282 | 261.31 | radiation | 1.0 | 720 | < th | dose independent | no | NA | NA |
| 287 | 261.35 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 3 | 6 |
| 331 | 261.60 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 7 | 21 |
| 341 | 261.74 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 6 | 22 |
| 349 | 261.90 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 10 | 22 |
| 353 | 261.93 | radiation | 1.0 | 720 | < th | dose independent | rect. | 17 | 23 |
| 355 | 261.94 | radiation | 1.0 | 720 | < th | dose dependent | sin | 1 | NA |
| 362 | 262.00 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 373 | 262.03 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 381 | 262.10 | radiation | 1.0 | 720 | < th | dose dependent | no | NA | NA |
| 400 | 262.23 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 407 | 262.30 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 17 | 23 |
| 413 | 262.37 | humidity | 80.0 | 720 | < th | dose independent | rect. | 15 | 3 |
| 430 | 262.47 | radiation | 1.0 | 720 | < th | dose independent | rect. | 15 | 23 |
| 437 | 262.55 | radiation | 1.0 | 720 | < th | dose independent | sin | 15 | NA |
| 442 | 262.57 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 443 | 262.60 | radiation | 1.0 | 720 | > th | dose independent | sin | 15 | NA |
| 459 | 262.71 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 467 | 262.78 | radiation | 1.0 | 720 | < th | dose independent | sin | 20 | NA |
| 478 | 262.85 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 20 | 23 |
| 496 | 263.03 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 497 | 263.05 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 504 | 263.11 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 520 | 263.24 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 3 |
| 523 | 263.28 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 8 |
| 530 | 263.33 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 531 | 263.33 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 1 | 17 |
| 533 | 263.33 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 1 | 17 |
| 537 | 263.39 | radiation | 1.0 | 720 | < th | dose independent | sin | 1 | NA |
| 541 | 263.42 | radiation | 1.0 | 720 | < th | dose dependent | sin | 14 | NA |
| 553 | 263.56 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 563 | 263.64 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 1 | 13 |
| 570 | 263.69 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 21 | 8 |
| 583 | 263.86 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 4 | 21 |
| 585 | 263.87 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 610 | 264.10 | atmosphere | 1000.0 | 90 | > th | dose dependent | rect. | 4 | 7 |
| 611 | 264.11 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 613 | 264.11 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 616 | 264.12 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 625 | 264.20 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 23 | 6 |
| 649 | 264.39 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 665 | 264.50 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 685 | 264.63 | radiation | 1.0 | 720 | < th | dose dependent | sin | 20 | NA |
| 694 | 264.65 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 715 | 264.80 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 3 | 19 |
| 739 | 264.99 | humidity | 60.0 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 741 | 265.01 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 11 | 21 |
| 813 | 265.37 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 828 | 265.53 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 21 | 8 |
| 832 | 265.54 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 15 | 13 |
| 834 | 265.54 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 15 | 13 |
| 843 | 265.61 | humidity | 80.0 | 720 | > th | dose independent | rect. | 3 | 14 |
| 868 | 265.73 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 4 | 21 |
| 869 | 265.74 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 17 | 12 |
| 870 | 265.74 | humidity | 80.0 | 720 | > th | dose independent | rect. | 3 | 16 |
| 875 | 265.75 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 885 | 265.80 | atmosphere | 1005.0 | 270 | > th | dose independent | sin | 3 | NA |
| 889 | 265.81 | temperature | 25.0 | 90 | < th | dose independent | rect. | 3 | 22 |
| 893 | 265.82 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 897 | 265.84 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 15 | 3 |
| 948 | 266.07 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 6 | 22 |
| 950 | 266.07 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 6 | 22 |
| 953 | 266.10 | temperature | 25.0 | 720 | < th | dose independent | rect. | 8 | 16 |
| 979 | 266.22 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 12 | 23 |
| 994 | 266.29 | humidity | 80.0 | 720 | > th | dose independent | rect. | 9 | 7 |