Os04g0474900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cyanogenic beta-glucosidase precursor (EC 3.2.1.21) (Linamarase) (Fragment).
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Os04g0474900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cyanogenic beta-glucosidase precursor (EC 3.2.1.21) (Linamarase) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 104.7 | 0.481 | 8.5 | -2.36 | 1.58 | -1.83 | 0.112 | -5.52 | -0.331 | 5.1 | 1.191 | 11636 | -- | -- |
| 142.31 | 0.556 | 8.4 | -1.56 | 1.45 | -1.17 | -0.306 | -- | -0.108 | 5.08 | 3.85 | 10397 | -- | -- |
| 102.56 | 0.472 | 8.5 | -2.23 | 1.44 | -1.89 | -- | -5.36 | -0.322 | 5.32 | 1.19 | 11780 | -- | -- |
| 134.96 | 0.541 | 8.33 | -1.33 | 1.43 | -1.11 | -- | -- | -0.14 | 4.8 | 10.01 | 10837 | -- | -- |
| 180.29 | 0.625 | 8.57 | -2.03 | -- | -2.46 | -- | -4.9 | -0.273 | -- | 1.174 | 13590 | -- | -- |
| 170.61 | 0.612 | 8.44 | -1.43 | 1.59 | -- | 0.29 | -- | -0.411 | 4.92 | -- | -- | -- | -- |
| 170.82 | 0.612 | 8.44 | -1.43 | 1.59 | -- | -- | -- | -0.412 | 4.95 | -- | -- | -- | -- |
| 225.06 | 0.699 | 8.61 | -1.03 | -- | -2.48 | -- | -- | -0.148 | -- | 2.14 | 9295 | -- | -- |
| 131.1 | 0.533 | 8.39 | -- | 1.52 | -1.23 | -- | -- | -0.0373 | 4.82 | 0.1817 | 43181 | -- | -- |
| 303.74 | 0.814 | 8.46 | -1.37 | -- | -- | -- | -- | -0.371 | -- | -- | -- | -- | -- |
| 224.63 | 0.701 | 8.41 | -- | 1.56 | -- | -- | -- | -0.253 | 4.98 | -- | -- | -- | -- |
| 240.97 | 0.723 | 8.51 | -- | -- | -2.06 | -- | -- | 0.0703 | -- | 1.868 | 12172 | -- | -- |
| 353.3 | 0.877 | 8.42 | -- | -- | -- | -- | -- | -0.219 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 104.36 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 14 | 3 |
| 3 | 104.51 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 16 | 3 |
| 5 | 104.61 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 7 | 104.64 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 13 | 5 |
| 9 | 104.66 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 14 | 3 |
| 11 | 104.67 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 13 | 104.68 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 11 | 7 |
| 14 | 104.69 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 11 | 7 |
| 19 | 104.74 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 30 | 104.89 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 7 | 11 |
| 45 | 105.18 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 9 | 9 |
| 54 | 105.36 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 12 | 6 |
| 55 | 105.38 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 56 | 105.38 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 61 | 105.43 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 10 | 10 |
| 72 | 105.56 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 76 | 105.61 | radiation | 1.0 | 14400 | > th | dose independent | sin | 21 | NA |
| 83 | 105.67 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 7 | 22 |
| 136 | 105.80 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 158 | 105.80 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 6 | 12 |
| 225 | 105.99 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 17 | 12 |
| 241 | 106.05 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 14 | 8 |
| 250 | 106.13 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 251 | 106.15 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 272 | 106.27 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 9 | 9 |
| 295 | 106.43 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 12 | 6 |
| 314 | 106.49 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 17 | 12 |
| 328 | 106.56 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 331 | 106.56 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 17 | 8 |
| 333 | 106.58 | radiation | 1.0 | 14400 | < th | dose independent | sin | 23 | NA |
| 337 | 106.59 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 17 | 6 |
| 339 | 106.59 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 9 | 23 |
| 341 | 106.60 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 16 | 5 |
| 356 | 106.61 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 12 | 22 |
| 360 | 106.61 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 2 | 1 |
| 361 | 106.62 | radiation | 1.0 | 14400 | > th | dose independent | no | NA | NA |
| 411 | 106.64 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 429 | 106.68 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 444 | 106.72 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 6 | 17 |
| 462 | 106.74 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 9 | 13 |
| 487 | 106.81 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 22 | 20 |
| 494 | 106.82 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 24 | 18 |
| 499 | 106.82 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 13 |
| 516 | 106.87 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 518 | 106.87 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 17 | 23 |
| 523 | 106.88 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 527 | 106.89 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 530 | 106.90 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 15 | 10 |
| 533 | 106.91 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 15 | 8 |
| 551 | 106.93 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 23 |
| 575 | 107.00 | humidity | 90.0 | 43200 | < th | dose independent | sin | 19 | NA |
| 604 | 107.03 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 16 | 5 |
| 616 | 107.03 | humidity | 80.0 | 43200 | > th | dose dependent | sin | 20 | NA |
| 638 | 107.07 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 646 | 107.08 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 9 | 16 |
| 648 | 107.09 | wind | 3.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 651 | 107.09 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 9 | 14 |
| 658 | 107.10 | radiation | 1.0 | 14400 | < th | dose independent | sin | 15 | NA |
| 659 | 107.10 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 693 | 107.13 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 9 | 23 |
| 701 | 107.14 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 12 | 22 |
| 743 | 107.18 | radiation | 1.0 | 14400 | < th | dose independent | no | NA | NA |
| 755 | 107.18 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 14 | 18 |
| 810 | 107.21 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 17 | 3 |
| 815 | 107.21 | atmosphere | 1005.0 | 43200 | > th | dose dependent | rect. | 13 | 2 |
| 839 | 107.24 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 13 | 14 |
| 864 | 107.29 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 897 | 107.34 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 924 | 107.37 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 17 | 23 |