Os04g0474800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Amygdalin hydrolase isoform AH I precursor (EC 3.2.1.117).
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Os04g0474800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Amygdalin hydrolase isoform AH I precursor (EC 3.2.1.117).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 254.98 | 0.75 | 8.68 | -0.93 | 0.856 | 3.78 | 1.79 | 3.05 | 0.134 | 22.1 | 1.015 | 1441 | -- | -- |
| 258.14 | 0.748 | 8.63 | -0.637 | 0.642 | 3.29 | 1.92 | -- | 0.182 | 21.6 | 1.358 | 1466 | -- | -- |
| 266.53 | 0.76 | 8.68 | -0.978 | 0.748 | 3.87 | -- | 3.12 | 0.137 | 22 | 1.06 | 1452 | -- | -- |
| 271.28 | 0.767 | 8.63 | -0.719 | 0.651 | 3.24 | -- | -- | 0.165 | 21.9 | 1.387 | 1464 | -- | -- |
| 275.14 | 0.773 | 8.66 | -1.09 | -- | 4.07 | -- | 3.19 | 0.1 | -- | 1.107 | 1506 | -- | -- |
| 371.89 | 0.904 | 8.72 | -1.37 | 0.873 | -- | 1.56 | -- | -0.23 | 21.9 | -- | -- | -- | -- |
| 380.96 | 0.914 | 8.72 | -1.44 | 0.863 | -- | -- | -- | -0.236 | 22.3 | -- | -- | -- | -- |
| 283.89 | 0.785 | 8.6 | -0.737 | -- | 3.49 | -- | -- | 0.205 | -- | 1.41 | 1512 | -- | -- |
| 283.18 | 0.784 | 8.61 | -- | 0.678 | 3.55 | -- | -- | 0.272 | 22 | 1.125 | 1459 | -- | -- |
| 426.39 | 0.965 | 8.7 | -1.42 | -- | -- | -- | -- | -0.233 | -- | -- | -- | -- | -- |
| 435.28 | 0.976 | 8.69 | -- | 0.856 | -- | -- | -- | -0.0759 | 22.2 | -- | -- | -- | -- |
| 295.03 | 0.8 | 8.58 | -- | -- | 3.97 | -- | -- | 0.304 | -- | 1.17 | 1504 | -- | -- |
| 479.73 | 1.02 | 8.67 | -- | -- | -- | -- | -- | -0.0755 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 250.61 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 2 | 251.62 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 3 | 253.67 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 1 | NA |
| 5 | 253.71 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 23 |
| 6 | 253.82 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 2 | 16 |
| 11 | 254.02 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 23 | 19 |
| 12 | 254.03 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 21 | 21 |
| 37 | 254.79 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 2 | 22 |
| 75 | 254.99 | radiation | 1.0 | 1440 | < th | dose dependent | no | NA | NA |
| 91 | 255.11 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 5 | 13 |
| 94 | 255.27 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 95 | 255.36 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 2 | 16 |
| 96 | 255.37 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 5 | 13 |
| 105 | 255.55 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 21 | 21 |
| 126 | 256.13 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 135 | 257.15 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 136 | 257.23 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 138 | 257.38 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 142 | 257.50 | radiation | 1.0 | 1440 | > th | dose independent | sin | 0 | NA |
| 143 | 257.50 | radiation | 1.0 | 1440 | < th | dose independent | sin | 0 | NA |
| 144 | 257.54 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 146 | 257.64 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 149 | 257.82 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 168 | 259.17 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 5 | 17 |
| 170 | 259.18 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 5 | 19 |
| 172 | 259.29 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 196 | 259.41 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 2 | 22 |
| 230 | 259.59 | radiation | 1.0 | 1440 | < th | dose independent | no | NA | NA |
| 240 | 259.64 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 13 | 16 |
| 247 | 259.79 | radiation | 1.0 | 1440 | > th | dose independent | no | NA | NA |
| 314 | 260.25 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 340 | 260.54 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 373 | 261.10 | wind | 7.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 377 | 261.25 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 380 | 261.35 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 390 | 261.49 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 2 | 1 |
| 396 | 261.58 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 20 | 7 |
| 400 | 261.63 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 2 | 3 |
| 402 | 261.65 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 1 | 9 |
| 413 | 261.73 | wind | 7.0 | 43200 | > th | dose independent | rect. | 13 | 5 |
| 414 | 261.73 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 532 | 262.50 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 536 | 262.52 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 539 | 262.55 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 24 | 6 |
| 557 | 262.61 | temperature | 25.0 | 14400 | < th | dose dependent | sin | 8 | NA |
| 599 | 262.90 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 657 | 263.16 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 697 | 263.36 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 14 | NA |
| 701 | 263.40 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 738 | 263.57 | wind | 7.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 739 | 263.57 | wind | 7.0 | 43200 | < th | dose independent | rect. | 13 | 5 |
| 764 | 263.67 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 9 | 3 |
| 793 | 263.78 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 823 | 263.93 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 9 | 3 |
| 893 | 264.23 | temperature | 20.0 | 14400 | < th | dose independent | sin | 11 | NA |
| 899 | 264.24 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 953 | 264.42 | wind | 1.0 | 43200 | > th | dose independent | rect. | 21 | 7 |
| 958 | 264.43 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 2 | 8 |
| 998 | 264.55 | wind | 1.0 | 43200 | < th | dose independent | rect. | 19 | 9 |
| 999 | 264.55 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 7 | 12 |