Os04g0474600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glycoside hydrolase, family 1 protein.
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Os04g0474600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glycoside hydrolase, family 1 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 140.65 | 0.557 | 3.66 | -1.88 | 0.864 | 0.742 | -1.87 | -5.48 | 0.108 | 10.9 | 25.53 | 9 | -- | -- |
| 149.62 | 0.574 | 3.59 | -1.32 | 0.886 | 0.348 | -2.34 | -- | 0.215 | 11.3 | 20.6 | 12 | -- | -- |
| 153.61 | 0.582 | 3.68 | -2.15 | 0.852 | 0.822 | -- | -6.7 | 0.0271 | 10.9 | 24.84 | 9 | -- | -- |
| 171.66 | 0.61 | 3.6 | -1.47 | 1.02 | 0.291 | -- | -- | 0.196 | 11.7 | 22.21 | 1234 | -- | -- |
| 192.51 | 0.65 | 3.73 | -2.36 | -- | 1.36 | -- | -7.34 | -0.0752 | -- | 24.43 | 4 | -- | -- |
| 151.66 | 0.577 | 3.58 | -1.25 | 0.979 | -- | -2.29 | -- | 0.274 | 11.5 | -- | -- | -- | -- |
| 174.4 | 0.618 | 3.58 | -1.34 | 0.989 | -- | -- | -- | 0.265 | 11.5 | -- | -- | -- | -- |
| 214.39 | 0.682 | 3.64 | -1.59 | -- | 1.22 | -- | -- | 0.0907 | -- | 10.3 | 3 | -- | -- |
| 189.53 | 0.641 | 3.48 | -- | 0.973 | -0.861 | -- | -- | 0.708 | 11.5 | 17.8 | 47520 | -- | -- |
| 235.84 | 0.718 | 3.61 | -1.37 | -- | -- | -- | -- | 0.254 | -- | -- | -- | -- | -- |
| 221.86 | 0.697 | 3.55 | -- | 1 | -- | -- | -- | 0.414 | 11.6 | -- | -- | -- | -- |
| 248.73 | 0.735 | 3.5 | -- | -- | -0.894 | -- | -- | 0.733 | -- | 20.18 | 47520 | -- | -- |
| 285.24 | 0.788 | 3.57 | -- | -- | -- | -- | -- | 0.406 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 138.30 | temperature | 25 | 270 | > th | dose independent | sin | 6 | NA |
| 3 | 138.72 | temperature | 25 | 30 | > th | dose dependent | rect. | 4 | 12 |
| 4 | 138.72 | temperature | 25 | 30 | > th | dose dependent | rect. | 1 | 15 |
| 10 | 138.77 | radiation | 1 | 720 | < th | dose independent | rect. | 9 | 1 |
| 11 | 138.77 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 1 |
| 13 | 138.82 | temperature | 25 | 30 | > th | dose dependent | rect. | 21 | 19 |
| 15 | 138.84 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 21 |
| 16 | 138.85 | temperature | 25 | 270 | > th | dose dependent | sin | 7 | NA |
| 26 | 138.89 | temperature | 25 | 270 | < th | dose independent | rect. | 24 | 14 |
| 41 | 139.04 | radiation | 1 | 270 | < th | dose independent | rect. | 9 | 4 |
| 42 | 139.04 | radiation | 1 | 270 | < th | dose dependent | rect. | 9 | 4 |
| 43 | 139.06 | temperature | 25 | 270 | > th | dose independent | rect. | 24 | 13 |
| 47 | 139.12 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 78 | 139.55 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 7 |
| 113 | 139.84 | temperature | 25 | 90 | > th | dose dependent | sin | 4 | NA |
| 179 | 140.18 | temperature | 25 | 270 | < th | dose independent | sin | 4 | NA |
| 196 | 140.27 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 20 |
| 198 | 140.28 | humidity | 90 | 720 | > th | dose dependent | rect. | 1 | 11 |
| 229 | 140.40 | humidity | 80 | 1440 | < th | dose independent | sin | 3 | NA |
| 245 | 140.49 | temperature | 25 | 720 | < th | dose independent | rect. | 1 | 9 |
| 267 | 140.55 | humidity | 80 | 270 | > th | dose independent | rect. | 8 | 6 |
| 347 | 140.77 | wind | 5 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 367 | 140.87 | temperature | 25 | 10 | > th | dose dependent | rect. | 24 | 23 |
| 378 | 140.91 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 19 |
| 382 | 140.91 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 22 |
| 387 | 140.92 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 391 | 140.93 | humidity | 90 | 720 | > th | dose dependent | sin | 5 | NA |
| 477 | 141.03 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 23 |
| 483 | 141.05 | wind | 5 | 14400 | > th | dose dependent | rect. | 11 | 5 |
| 489 | 141.07 | humidity | 90 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 505 | 141.10 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 1 |
| 507 | 141.11 | humidity | 80 | 1440 | > th | dose independent | sin | 3 | NA |
| 519 | 141.16 | humidity | 90 | 270 | > th | dose dependent | rect. | 11 | 2 |
| 528 | 141.18 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 21 |
| 536 | 141.21 | humidity | 90 | 270 | > th | dose independent | rect. | 11 | 2 |
| 537 | 141.21 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 12 |
| 568 | 141.26 | temperature | 25 | 270 | > th | dose independent | rect. | 19 | 20 |
| 600 | 141.29 | wind | 7 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 615 | 141.31 | radiation | 1 | 1440 | < th | dose dependent | sin | 16 | NA |
| 625 | 141.33 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 17 |
| 633 | 141.34 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 7 |
| 638 | 141.35 | wind | 1 | 14400 | > th | dose dependent | rect. | 11 | 2 |
| 655 | 141.36 | humidity | 70 | 720 | > th | dose dependent | rect. | 24 | 14 |
| 669 | 141.38 | wind | 7 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 672 | 141.38 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 11 |
| 697 | 141.43 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 21 |
| 701 | 141.43 | temperature | 25 | 10 | > th | dose dependent | rect. | 14 | 23 |
| 707 | 141.45 | wind | 7 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 720 | 141.48 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 21 |
| 725 | 141.49 | wind | 7 | 14400 | < th | dose independent | rect. | 11 | 5 |
| 728 | 141.49 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 12 |
| 745 | 141.51 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 763 | 141.54 | wind | 7 | 14400 | > th | dose independent | rect. | 11 | 5 |
| 765 | 141.55 | humidity | 80 | 270 | < th | dose independent | rect. | 7 | 8 |
| 766 | 141.55 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 17 |
| 777 | 141.57 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 9 |
| 795 | 141.60 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 14 |
| 807 | 141.62 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 17 |
| 811 | 141.62 | radiation | 1 | 720 | < th | dose dependent | rect. | 24 | 15 |
| 818 | 141.63 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 12 |
| 862 | 141.67 | radiation | 1 | 1440 | > th | dose independent | rect. | 15 | 15 |
| 919 | 141.72 | humidity | 90 | 720 | > th | dose dependent | rect. | 3 | 2 |
| 960 | 141.77 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 15 |
| 977 | 141.79 | radiation | 1 | 1440 | > th | dose independent | sin | 15 | NA |