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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0474500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cyanogenic beta-glucosidase precursor (EC 3.2.1.21) (Linamarase) (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.97 (0.0821) R2 : 0.579
β1 : -7.19 (0.542) R2dD : 1.27 R2D : 0.196
β2 : 0.785 (0.141) R2dC : 0.0287 R2C : -0.00819
β3 : 2.54 (0.265) R2dE : 0.264 R2E : -0.162
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -10.3 (2.04) R2dD*E : 0.198 R2D*E : -0.676
γ1 : -0.476 (0.159) R2dN8 : 0.0202 R2N8 : -0.0722
σ : 1.01
deviance : 470.16
__
_____
C
peak time of C : 6.39
E
wheather : temperature
threshold : 26.26
memory length : 1269
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
470.89 1.02 5.96 -7.05 0.763 2.42 0.227 -9.12 -0.53 6.39 25.64 1293 -- --
497.7 1.04 5.72 -4.63 0.736 1.48 -0.00152 -- -0.0739 6 25.76 1264 -- --
470.16 1.01 5.97 -7.19 0.785 2.54 -- -10.3 -0.476 6.39 26.26 1269 -- --
495.55 1.04 5.66 -4.69 0.764 1.48 -- -- 0.0821 6.31 26.22 1245 -- --
501.22 1.04 5.99 -7.09 -- 2.49 -- -9.33 -0.511 -- 25.83 1291 -- --
583.17 1.13 5.65 -4.21 0.855 -- 0.128 -- 0.153 5.31 -- -- -- --
583.21 1.13 5.65 -4.21 0.856 -- -- -- 0.152 5.29 -- -- -- --
524.49 1.07 5.68 -4.69 -- 1.5 -- -- 0.078 -- 26.02 1285 -- --
1039.18 1.5 5.53 -- 0.709 0.856 -- -- 0.689 4.66 28.3 1263 -- --
621.46 1.16 5.66 -4.18 -- -- -- -- 0.173 -- -- -- -- --
1051.16 1.52 5.54 -- 0.785 -- -- -- 0.621 5.49 -- -- -- --
1053.13 1.51 5.53 -- -- 0.785 -- -- 0.788 -- 33.6 1061 -- --
1083.26 1.54 5.55 -- -- -- -- -- 0.638 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 465.52 wind 3 43200 > th dose dependent rect. 10 6
2 465.68 wind 5 43200 > th dose independent rect. 11 5
4 466.23 wind 5 43200 > th dose independent rect. 10 7
5 466.28 wind 5 43200 < th dose independent rect. 9 8
6 466.30 wind 5 43200 < th dose independent rect. 10 6
11 467.00 wind 3 43200 > th dose dependent rect. 11 4
12 467.28 humidity 80 43200 < th dose dependent rect. 22 1
14 467.65 wind 5 43200 > th dose dependent rect. 13 3
17 468.25 temperature 25 1440 > th dose dependent rect. 16 1
31 469.73 wind 3 43200 < th dose dependent rect. 9 1
39 470.42 temperature 25 1440 > th dose dependent rect. 15 8
42 470.55 wind 5 43200 > th dose dependent rect. 6 13
43 470.56 wind 7 43200 > th dose dependent rect. 5 16
68 471.13 temperature 25 1440 > th dose dependent rect. 15 4
81 471.45 temperature 25 720 > th dose dependent rect. 18 5
82 471.49 wind 5 43200 > th dose independent rect. 9 12
99 471.85 wind 5 43200 < th dose independent sin 22 NA
104 471.92 wind 5 43200 > th dose dependent sin 22 NA
106 471.96 wind 5 43200 < th dose independent rect. 9 12
109 471.97 temperature 25 1440 > th dose dependent rect. 15 17
113 472.05 wind 5 43200 > th dose independent sin 22 NA
132 472.33 wind 9 43200 < th dose dependent rect. 9 6
161 472.71 wind 7 43200 > th dose dependent rect. 24 21
252 473.93 wind 5 43200 > th dose independent rect. 10 15
258 473.98 wind 7 43200 > th dose dependent rect. 24 16
261 474.02 wind 9 43200 > th dose independent rect. 18 21
276 474.12 wind 9 43200 < th dose dependent rect. 8 8
302 474.39 temperature 25 1440 > th dose dependent sin 15 NA
318 474.59 wind 9 43200 > th dose dependent rect. 13 19
326 474.73 wind 9 43200 < th dose independent rect. 18 21
365 475.08 humidity 90 43200 > th dose independent rect. 4 3
391 475.31 temperature 25 720 > th dose dependent rect. 18 14
412 475.43 wind 9 43200 < th dose dependent rect. 11 3
427 475.59 humidity 70 720 < th dose independent rect. 18 14
428 475.59 wind 7 43200 < th dose independent rect. 2 15
457 475.75 wind 7 43200 < th dose independent rect. 24 17
458 475.75 wind 5 43200 < th dose independent rect. 11 19
481 475.96 wind 7 43200 > th dose dependent rect. 5 20
487 476.02 wind 7 43200 > th dose dependent rect. 13 22
496 476.08 wind 5 43200 > th dose independent rect. 15 1
511 476.20 wind 7 43200 > th dose independent rect. 24 17
513 476.21 wind 7 43200 > th dose independent rect. 2 15
609 476.85 humidity 90 43200 > th dose independent rect. 5 1
615 476.89 wind 9 43200 > th dose independent rect. 13 21
619 476.91 wind 7 43200 > th dose dependent rect. 18 22
659 477.21 wind 9 43200 < th dose independent rect. 13 21
670 477.27 radiation 10 43200 > th dose independent rect. 10 1
705 477.54 wind 7 43200 < th dose independent rect. 24 21
734 477.69 humidity 80 43200 > th dose independent rect. 24 1
740 477.71 humidity 80 43200 < th dose independent rect. 23 1
764 477.84 humidity 70 720 < th dose independent rect. 18 2
827 478.06 wind 7 43200 > th dose independent rect. 24 21
840 478.11 wind 1 43200 > th dose independent rect. 8 3
857 478.17 humidity 90 43200 > th dose independent rect. 3 5
863 478.18 radiation 10 1440 < th dose dependent rect. 18 11
897 478.37 radiation 40 43200 > th dose independent rect. 10 1
948 478.67 wind 7 43200 > th dose dependent no NA NA
951 478.68 humidity 90 43200 > th dose independent rect. 2 8
969 478.76 wind 5 43200 < th dose independent rect. 15 1