Os04g0474300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glycoside hydrolase, family 1 protein.
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Os04g0474300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glycoside hydrolase, family 1 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.94 | 0.325 | 9.15 | -0.917 | 0.396 | 0.62 | -0.895 | 0.062 | 0.168 | 20.3 | 21.6 | 638 | -- | -- |
| 47.95 | 0.323 | 9.15 | -0.934 | 0.394 | 0.619 | -0.87 | -- | 0.165 | 20.3 | 21.6 | 638 | -- | -- |
| 49.86 | 0.329 | 9.16 | -0.974 | 0.417 | 0.631 | -- | -0.237 | 0.16 | 19.7 | 21.8 | 741 | -- | -- |
| 50.17 | 0.33 | 9.16 | -0.915 | 0.408 | 0.633 | -- | -- | 0.158 | 19.7 | 21.78 | 741 | -- | -- |
| 58.31 | 0.356 | 9.16 | -1.02 | -- | 0.721 | -- | -0.281 | 0.11 | -- | 21.78 | 689 | -- | -- |
| 63.45 | 0.373 | 9.12 | -0.713 | 0.517 | -- | -0.872 | -- | 0.349 | 20.3 | -- | -- | -- | -- |
| 65.77 | 0.38 | 9.12 | -0.685 | 0.522 | -- | -- | -- | 0.349 | 20.1 | -- | -- | -- | -- |
| 58.59 | 0.357 | 9.15 | -0.946 | -- | 0.719 | -- | -- | 0.125 | -- | 21.76 | 673 | -- | -- |
| 69.96 | 0.39 | 9.13 | -- | 0.426 | 0.445 | -- | -- | 0.298 | 19.7 | 22 | 637 | -- | -- |
| 80.72 | 0.42 | 9.1 | -0.69 | -- | -- | -- | -- | 0.343 | -- | -- | -- | -- | -- |
| 78.15 | 0.414 | 9.1 | -- | 0.526 | -- | -- | -- | 0.426 | 20 | -- | -- | -- | -- |
| 80.25 | 0.417 | 9.12 | -- | -- | 0.519 | -- | -- | 0.275 | -- | 21.91 | 660 | -- | -- |
| 93.28 | 0.451 | 9.09 | -- | -- | -- | -- | -- | 0.42 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.22 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 10 |
| 11 | 45.51 | temperature | 25 | 720 | < th | dose dependent | sin | 8 | NA |
| 14 | 45.58 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 5 |
| 26 | 45.88 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 31 | 45.96 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 39 | 46.08 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 2 |
| 75 | 46.58 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 7 |
| 94 | 46.76 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 9 |
| 148 | 47.24 | temperature | 15 | 720 | > th | dose dependent | sin | 9 | NA |
| 205 | 47.59 | temperature | 20 | 720 | > th | dose independent | sin | 7 | NA |
| 228 | 47.73 | temperature | 20 | 720 | < th | dose independent | sin | 7 | NA |
| 266 | 47.93 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 15 |
| 296 | 48.08 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 713 | 49.79 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 837 | 50.25 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 863 | 50.34 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 2 |