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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0473900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Adrenodoxin reductase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.78 (0.0371) R2 : 0.544
β1 : 1.44 (0.14) R2dD : 0.118 R2D : 0.0399
β2 : 1.69 (0.093) R2dC : 0.33 R2C : 0.35
β3 : -1.3 (0.116) R2dE : 0.158 R2E : 0.112
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.144 (0.0856) R2dN8 : 0.00494 R2N8 : -0.0244
σ : 0.677
deviance : 211.07
__
_____
C
peak time of C : 16.4
E
wheather : temperature
threshold : 22
memory length : 1385
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
208.1 0.678 3.78 1.62 1.72 -1.44 1.39 0.317 0.122 16.2 21.1 1578 -- --
207.88 0.672 3.79 1.5 1.69 -1.42 1.4 -- 0.126 16.2 21.3 1471 -- --
210.67 0.676 3.76 1.64 1.7 -1.2 -- 0.847 0.178 16.3 22.1 1508 -- --
211.07 0.677 3.78 1.44 1.69 -1.3 -- -- 0.144 16.4 22 1385 -- --
360.39 0.884 3.74 1.6 -- -1.36 -- 0.739 0.216 -- 22.2 1262 -- --
262.54 0.76 3.88 0.909 1.73 -- 1.25 -- -0.275 16.2 -- -- -- --
266.83 0.765 3.88 0.921 1.74 -- -- -- -0.268 16.3 -- -- -- --
360 0.884 3.77 1.37 -- -1.4 -- -- 0.132 -- 21.96 1211 -- --
256.67 0.746 3.84 -- 1.67 -0.901 -- -- -0.107 16.4 22.1 1364 -- --
430.76 0.97 3.87 0.852 -- -- -- -- -0.314 -- -- -- -- --
289.18 0.795 3.9 -- 1.73 -- -- -- -0.37 16.3 -- -- -- --
403.16 0.935 3.82 -- -- -1.02 -- -- -0.0942 -- 22.36 1189 -- --
449.89 0.99 3.89 -- -- -- -- -- -0.409 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 197.51 temperature 20 1440 < th dose independent rect. 5 1
2 199.96 temperature 20 1440 > th dose independent rect. 5 1
3 200.29 temperature 20 1440 < th dose independent rect. 4 3
5 200.82 temperature 20 1440 > th dose independent rect. 4 3
11 203.31 wind 9 43200 > th dose dependent rect. 18 13
12 203.32 radiation 1 43200 > th dose dependent rect. 18 1
23 203.67 radiation 1 14400 < th dose dependent rect. 4 2
27 203.76 temperature 20 270 > th dose dependent rect. 16 20
32 203.98 radiation 1 14400 < th dose dependent rect. 20 10
34 204.00 humidity 90 43200 > th dose dependent rect. 13 2
39 204.32 temperature 15 43200 < th dose dependent rect. 2 6
43 204.38 radiation 1 14400 < th dose dependent rect. 18 13
46 204.42 temperature 15 43200 < th dose dependent rect. 5 1
58 204.55 radiation 1 43200 < th dose independent rect. 18 11
59 204.55 temperature 15 43200 < th dose dependent rect. 3 1
67 204.61 temperature 25 1440 < th dose dependent rect. 21 1
68 204.63 temperature 20 1440 > th dose independent rect. 21 10
95 204.84 temperature 20 1440 < th dose independent rect. 21 10
101 204.89 radiation 1 43200 < th dose independent rect. 18 1
103 204.90 radiation 1 43200 < th dose independent rect. 18 3
104 204.90 temperature 25 1440 < th dose dependent rect. 20 9
107 204.92 radiation 1 43200 < th dose independent rect. 18 7
130 205.06 temperature 15 1440 > th dose dependent rect. 1 2
134 205.09 wind 9 43200 > th dose dependent rect. 18 7
147 205.21 temperature 15 43200 < th dose dependent sin 5 NA
198 205.51 radiation 40 43200 < th dose dependent rect. 4 1
203 205.53 temperature 25 1440 < th dose dependent rect. 1 2
225 205.64 temperature 25 1440 < th dose dependent rect. 24 5
254 205.77 radiation 30 14400 > th dose independent rect. 16 16
257 205.78 temperature 15 1440 > th dose dependent rect. 20 9
316 205.94 humidity 90 43200 > th dose dependent rect. 5 2
333 205.97 temperature 15 43200 < th dose dependent rect. 14 17
391 206.04 temperature 20 1440 > th dose dependent rect. 21 1
474 206.16 temperature 15 43200 < th dose dependent no NA NA
505 206.28 radiation 40 43200 < th dose independent rect. 4 4
518 206.32 radiation 40 14400 < th dose independent rect. 19 13
554 206.43 radiation 10 4320 < th dose independent rect. 16 14
556 206.44 radiation 40 14400 < th dose independent rect. 21 11
591 206.60 humidity 90 43200 > th dose independent rect. 5 2
596 206.62 wind 9 43200 > th dose independent rect. 18 14
611 206.65 radiation 1 14400 < th dose dependent rect. 17 2
633 206.71 temperature 20 4320 > th dose independent rect. 21 2
640 206.72 wind 9 43200 > th dose independent rect. 18 3
648 206.74 radiation 1 14400 > th dose independent rect. 18 1
675 206.79 radiation 30 14400 > th dose dependent rect. 16 16
702 206.89 radiation 30 14400 > th dose independent rect. 7 1
767 207.05 temperature 25 1440 < th dose dependent sin 11 NA
777 207.08 temperature 15 43200 < th dose independent rect. 24 1
783 207.11 wind 5 43200 > th dose independent rect. 13 2
818 207.26 radiation 1 14400 < th dose dependent sin 11 NA
851 207.33 wind 5 43200 < th dose independent rect. 13 2
865 207.38 temperature 15 43200 > th dose independent rect. 1 1
882 207.44 temperature 20 4320 < th dose independent rect. 21 2
893 207.49 temperature 15 43200 < th dose independent rect. 6 1
895 207.49 wind 9 43200 > th dose dependent rect. 18 3
939 207.62 wind 9 43200 > th dose independent rect. 18 7
943 207.64 wind 7 43200 > th dose independent rect. 6 1
952 207.67 temperature 20 1440 > th dose independent sin 10 NA
955 207.68 radiation 1 14400 < th dose dependent rect. 18 20
968 207.71 temperature 15 43200 < th dose independent rect. 24 9