Os04g0472600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os04g0472600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.9 | 0.22 | 12 | 0.408 | 0.549 | 0.332 | 0.106 | -0.532 | 0.279 | 1.87 | 79 | 644 | -- | -- |
| 22.5 | 0.221 | 12 | 0.372 | 0.59 | 0.341 | 0.124 | -- | 0.273 | 1.98 | 78.69 | 737 | -- | -- |
| 21.94 | 0.218 | 12 | 0.405 | 0.549 | 0.331 | -- | -0.534 | 0.278 | 1.9 | 79 | 644 | -- | -- |
| 22.55 | 0.221 | 12 | 0.369 | 0.59 | 0.33 | -- | -- | 0.272 | 2.08 | 78.84 | 737 | -- | -- |
| 28.81 | 0.25 | 12 | 0.368 | -- | 0.439 | -- | -0.0789 | 0.283 | -- | 79 | 211 | -- | -- |
| 24.71 | 0.233 | 12 | 0.345 | 0.619 | -- | -0.0139 | -- | 0.267 | 3.32 | -- | -- | -- | -- |
| 24.71 | 0.233 | 12 | 0.345 | 0.619 | -- | -- | -- | 0.267 | 3.31 | -- | -- | -- | -- |
| 28.84 | 0.25 | 12 | 0.366 | -- | 0.438 | -- | -- | 0.286 | -- | 79.18 | 210 | -- | -- |
| 26.02 | 0.238 | 12 | -- | 0.638 | 0.309 | -- | -- | 0.241 | 2.36 | 80.26 | 830 | -- | -- |
| 46.33 | 0.318 | 12 | 0.372 | -- | -- | -- | -- | 0.284 | -- | -- | -- | -- | -- |
| 27.85 | 0.247 | 12 | -- | 0.626 | -- | -- | -- | 0.229 | 3.31 | -- | -- | -- | -- |
| 32.36 | 0.265 | 12 | -- | -- | 0.435 | -- | -- | 0.245 | -- | 79.43 | 201 | -- | -- |
| 49.97 | 0.33 | 12 | -- | -- | -- | -- | -- | 0.242 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.09 | temperature | 25 | 1440 | < th | dose independent | rect. | 24 | 3 |
| 13 | 20.42 | temperature | 25 | 4320 | > th | dose independent | rect. | 24 | 1 |
| 25 | 20.62 | temperature | 25 | 1440 | > th | dose independent | rect. | 23 | 6 |
| 44 | 20.80 | temperature | 20 | 10 | > th | dose independent | rect. | 19 | 10 |
| 62 | 20.98 | temperature | 25 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 63 | 20.98 | temperature | 25 | 1440 | > th | dose dependent | rect. | 24 | 3 |
| 65 | 20.99 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 11 |
| 71 | 21.03 | temperature | 25 | 270 | > th | dose independent | rect. | 24 | 5 |
| 89 | 21.13 | temperature | 20 | 10 | > th | dose independent | rect. | 13 | 16 |
| 94 | 21.17 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 3 |
| 100 | 21.18 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 10 |
| 102 | 21.19 | temperature | 15 | 30 | > th | dose dependent | rect. | 19 | 10 |
| 115 | 21.26 | temperature | 25 | 270 | > th | dose dependent | rect. | 1 | 4 |
| 126 | 21.31 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 1 |
| 148 | 21.36 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 15 |
| 159 | 21.40 | temperature | 20 | 10 | > th | dose independent | rect. | 15 | 14 |
| 166 | 21.43 | temperature | 25 | 270 | < th | dose independent | rect. | 17 | 16 |
| 173 | 21.44 | temperature | 25 | 270 | > th | dose dependent | rect. | 1 | 1 |
| 180 | 21.48 | temperature | 20 | 270 | > th | dose independent | sin | 15 | NA |
| 200 | 21.51 | humidity | 80 | 720 | > th | dose independent | rect. | 19 | 19 |
| 213 | 21.53 | humidity | 80 | 720 | < th | dose independent | rect. | 19 | 22 |
| 217 | 21.54 | temperature | 10 | 270 | > th | dose dependent | sin | 11 | NA |
| 232 | 21.57 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 6 |
| 236 | 21.57 | temperature | 25 | 270 | < th | dose independent | rect. | 21 | 12 |
| 242 | 21.59 | temperature | 20 | 10 | > th | dose independent | rect. | 21 | 8 |
| 248 | 21.61 | temperature | 25 | 270 | < th | dose independent | sin | 11 | NA |
| 305 | 21.69 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 8 |
| 356 | 21.77 | temperature | 20 | 10 | > th | dose independent | rect. | 11 | 18 |
| 384 | 21.80 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 386 | 21.81 | humidity | 80 | 720 | > th | dose independent | rect. | 19 | 10 |
| 393 | 21.82 | radiation | 10 | 720 | < th | dose independent | rect. | 17 | 8 |
| 413 | 21.84 | humidity | 80 | 720 | > th | dose independent | rect. | 8 | 21 |
| 421 | 21.85 | temperature | 20 | 10 | < th | dose independent | rect. | 19 | 10 |
| 433 | 21.86 | temperature | 20 | 10 | > th | dose independent | rect. | 2 | 3 |
| 450 | 21.87 | temperature | 15 | 10 | > th | dose dependent | rect. | 13 | 16 |
| 456 | 21.88 | temperature | 25 | 720 | < th | dose independent | rect. | 23 | 19 |
| 458 | 21.88 | temperature | 10 | 10 | > th | dose dependent | sin | 12 | NA |
| 465 | 21.89 | humidity | 80 | 720 | > th | dose independent | rect. | 24 | 15 |
| 471 | 21.89 | wind | 1 | 10 | > th | dose dependent | rect. | 4 | 1 |
| 500 | 21.92 | temperature | 20 | 90 | < th | dose independent | rect. | 18 | 10 |
| 525 | 21.93 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 12 |
| 526 | 21.94 | temperature | 20 | 10 | > th | dose independent | sin | 13 | NA |
| 547 | 21.95 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 14 |
| 569 | 21.97 | wind | 7 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 571 | 21.97 | temperature | 10 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 574 | 21.97 | temperature | 30 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 578 | 21.97 | humidity | 50 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 587 | 21.97 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 588 | 21.97 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 589 | 21.97 | radiation | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 606 | 21.97 | temperature | 10 | 1440 | > th | dose independent | rect. | 6 | 23 |
| 639 | 21.99 | temperature | 20 | 10 | < th | dose independent | rect. | 15 | 14 |
| 682 | 22.01 | humidity | 80 | 720 | > th | dose independent | rect. | 24 | 22 |
| 691 | 22.02 | humidity | 80 | 720 | < th | dose independent | rect. | 8 | 7 |
| 693 | 22.02 | humidity | 80 | 720 | < th | dose independent | rect. | 8 | 9 |
| 697 | 22.02 | temperature | 20 | 90 | < th | dose independent | rect. | 15 | 13 |
| 734 | 22.04 | temperature | 25 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 753 | 22.05 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 1 |
| 756 | 22.06 | temperature | 25 | 10 | > th | dose independent | rect. | 4 | 1 |
| 766 | 22.06 | humidity | 80 | 720 | < th | dose independent | rect. | 8 | 21 |
| 775 | 22.07 | temperature | 25 | 90 | > th | dose independent | rect. | 4 | 1 |
| 787 | 22.07 | temperature | 15 | 90 | > th | dose dependent | rect. | 11 | 16 |
| 808 | 22.08 | radiation | 10 | 720 | < th | dose dependent | rect. | 9 | 18 |
| 809 | 22.09 | radiation | 10 | 720 | < th | dose independent | sin | 16 | NA |
| 825 | 22.09 | radiation | 10 | 720 | < th | dose independent | rect. | 11 | 18 |
| 845 | 22.10 | radiation | 10 | 720 | < th | dose independent | rect. | 14 | 13 |
| 884 | 22.12 | humidity | 80 | 720 | > th | dose independent | sin | 10 | NA |
| 900 | 22.12 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 6 |
| 902 | 22.12 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 12 |
| 937 | 22.13 | radiation | 10 | 720 | < th | dose dependent | rect. | 8 | 21 |
| 941 | 22.14 | humidity | 80 | 720 | > th | dose independent | no | NA | NA |
| 962 | 22.14 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 19 |
| 977 | 22.15 | radiation | 10 | 720 | < th | dose independent | rect. | 13 | 16 |
| 991 | 22.15 | temperature | 25 | 90 | < th | dose dependent | sin | 13 | NA |