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Os04g0472500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.15 (0.0323) R2 : 0.294
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.68 (0.123) R2dC : 0.621 R2C : -0.08
β3 : -1.53 (0.146) R2dE : 0.361 R2E : -0.338
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.222 (0.0684) R2dN8 : 0.023 R2N8 : -8.41e-05
σ : 0.605
deviance : 168.98
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_____
C
peak time of C : 18.8
E
wheather : radiation
threshold : 3.306e-06
memory length : 296
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 8.64
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
165.13 0.604 7.15 -0.273 1.62 -1.42 0.548 -1.96 0.19 18.8 0.009986 299 8.45 --
168.25 0.604 7.15 -0.198 1.59 -1.41 -0.367 -- 0.185 18.9 0.005811 298 8.55 --
165.59 0.599 7.15 -0.255 1.61 -1.41 -- -1.48 0.194 18.8 0.009916 298 8.48 --
168.37 0.604 7.15 -0.155 1.68 -1.51 -- -- 0.205 18.8 0.00824 296 8.65 --
203.48 0.664 7.12 -0.288 -- 0.751 -- -0.693 0.127 -- -36.99 265 12.6 --
203.48 0.669 7.14 -0.309 0.751 -- -0.691 -- 0.124 19.6 -- -- -- --
204.79 0.67 7.14 -0.293 0.749 -- -- -- 0.123 19.7 -- -- -- --
204.79 0.667 7.12 -0.293 -- 0.748 -- -- 0.123 -- -17.1 52 10.7 --
168.98 0.605 7.15 -- 1.68 -1.53 -- -- 0.222 18.8 3.306e-06 296 8.64 --
235.1 0.716 7.12 -0.303 -- -- -- -- 0.112 -- -- -- -- --
207.06 0.673 7.13 -- 0.751 -- -- -- 0.156 19.7 -- -- -- --
207.06 0.67 7.11 -- -- 0.75 -- -- 0.156 -- -19.95 63 10.8 --
237.51 0.719 7.11 -- -- -- -- -- 0.146 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 158.40 precipitation 0.1 270 < th dose independent rect. 19 19
2 158.40 precipitation 0.1 270 < th dose dependent rect. 19 19
3 159.21 temperature 15.0 270 > th dose independent rect. 19 19
4 159.67 temperature 15.0 270 > th dose independent rect. 7 8
5 159.75 wind 7.0 270 < th dose independent rect. 19 19
6 160.07 temperature 15.0 270 > th dose independent rect. 20 17
8 160.17 precipitation 0.1 270 < th dose independent rect. 19 8
9 160.17 precipitation 0.1 270 < th dose dependent rect. 19 8
10 160.25 radiation 1.0 270 > th dose independent rect. 7 7
11 160.25 precipitation 0.1 270 < th dose independent rect. 20 17
12 160.25 precipitation 0.1 270 < th dose dependent rect. 20 17
14 160.44 wind 7.0 270 < th dose independent rect. 20 17
21 160.84 wind 7.0 270 < th dose independent rect. 7 7
22 160.85 wind 7.0 270 < th dose independent rect. 14 5
23 160.85 temperature 30.0 270 < th dose dependent rect. 1 7
24 161.16 atmosphere 1000.0 270 > th dose independent rect. 14 5
25 161.22 wind 1.0 270 > th dose independent rect. 1 7
31 161.78 wind 1.0 270 > th dose independent rect. 14 17
40 162.35 temperature 10.0 270 > th dose independent rect. 14 5
42 162.35 atmosphere 1010.0 270 < th dose independent rect. 14 5
45 162.35 atmosphere 995.0 270 > th dose independent rect. 19 19
46 162.43 humidity 90.0 270 < th dose independent rect. 7 7
47 162.47 temperature 10.0 270 > th dose dependent rect. 19 18
48 162.49 wind 7.0 270 < th dose independent rect. 13 7
50 162.56 wind 1.0 270 > th dose independent rect. 3 16
51 162.86 wind 7.0 270 < th dose independent rect. 14 17
56 162.99 wind 1.0 270 > th dose independent rect. 14 5
60 163.01 radiation 30.0 30 < th dose dependent rect. 5 15
66 163.13 wind 9.0 270 < th dose dependent rect. 14 5
67 163.14 temperature 10.0 270 > th dose independent rect. 19 8
68 163.14 temperature 30.0 270 < th dose independent rect. 19 8
69 163.14 humidity 50.0 270 > th dose independent rect. 19 8
70 163.14 atmosphere 995.0 270 > th dose independent rect. 19 8
71 163.14 radiation 1.0 270 < th dose independent rect. 19 8
76 163.14 temperature 10.0 270 > th dose independent rect. 3 16
77 163.14 atmosphere 1015.0 270 < th dose independent rect. 3 16
78 163.14 radiation 1.0 270 < th dose dependent rect. 19 8
84 163.18 atmosphere 995.0 270 > th dose independent rect. 13 7
87 163.24 radiation 40.0 270 < th dose independent rect. 14 5
88 163.24 wind 9.0 270 < th dose independent rect. 19 8
95 163.52 atmosphere 995.0 270 > th dose dependent rect. 14 5
97 163.55 temperature 10.0 270 > th dose independent rect. 13 7
98 163.55 atmosphere 1015.0 270 < th dose independent rect. 13 7
100 163.55 atmosphere 995.0 270 > th dose independent rect. 20 17
108 163.74 humidity 50.0 270 > th dose independent rect. 20 17
111 163.82 wind 9.0 270 < th dose dependent rect. 19 18
114 163.84 humidity 50.0 270 > th dose independent rect. 19 19
115 163.85 precipitation 0.1 270 < th dose independent rect. 14 5
116 163.85 precipitation 0.1 270 < th dose dependent rect. 14 5
118 163.87 temperature 15.0 270 > th dose independent rect. 8 17
131 164.20 wind 9.0 270 < th dose independent rect. 3 16
137 164.25 precipitation 0.1 270 < th dose independent rect. 9 16
138 164.25 precipitation 0.1 270 < th dose dependent rect. 9 16
145 164.43 atmosphere 995.0 270 > th dose independent rect. 3 16
146 164.44 precipitation 0.1 270 < th dose independent rect. 7 8
147 164.44 precipitation 0.1 270 < th dose dependent rect. 7 8
148 164.45 wind 1.0 270 > th dose independent rect. 13 7
153 164.50 radiation 40.0 270 < th dose independent rect. 15 16
183 164.77 atmosphere 1015.0 270 < th dose independent rect. 7 8
184 164.77 temperature 10.0 270 > th dose independent rect. 15 16
185 164.78 wind 7.0 10 < th dose independent rect. 9 7
203 164.95 atmosphere 995.0 270 > th dose independent rect. 7 7
218 165.17 humidity 50.0 270 > th dose independent rect. 8 17
220 165.25 atmosphere 995.0 270 > th dose independent rect. 14 17
241 165.68 humidity 50.0 270 > th dose independent rect. 7 7
248 165.82 wind 9.0 270 < th dose dependent rect. 8 6
282 166.30 temperature 10.0 270 > th dose dependent rect. 19 8
319 166.64 radiation 40.0 90 < th dose dependent rect. 15 18
330 166.72 radiation 30.0 270 < th dose independent rect. 1 8
332 166.76 precipitation 0.1 270 < th dose independent rect. 3 16
334 166.76 precipitation 0.1 270 < th dose dependent rect. 3 16
354 166.93 radiation 20.0 90 < th dose independent rect. 16 17
372 167.16 wind 7.0 10 < th dose independent rect. 20 20
375 167.19 wind 9.0 270 < th dose independent rect. 9 16
377 167.22 wind 7.0 270 < th dose independent rect. 1 7
379 167.23 temperature 20.0 10 > th dose independent rect. 9 7
399 167.46 radiation 20.0 30 < th dose independent rect. 5 15
405 167.53 temperature 10.0 270 > th dose independent rect. 1 7
407 167.53 temperature 30.0 270 < th dose independent rect. 1 7
408 167.53 humidity 50.0 270 > th dose independent rect. 1 7
410 167.53 atmosphere 995.0 270 > th dose independent rect. 1 7
411 167.53 atmosphere 1015.0 270 < th dose independent rect. 1 7
421 167.57 wind 1.0 270 > th dose independent rect. 8 6
422 167.58 atmosphere 1015.0 270 < th dose independent rect. 19 19
430 167.64 radiation 40.0 270 < th dose dependent rect. 1 8
468 168.01 precipitation 0.1 10 < th dose independent rect. 20 9
469 168.01 precipitation 0.1 10 < th dose dependent rect. 20 9
490 168.13 temperature 10.0 270 > th dose dependent rect. 14 5
495 168.17 wind 9.0 270 < th dose dependent rect. 19 7
525 168.42 temperature 10.0 10 > th dose dependent rect. 20 20
528 168.46 atmosphere 1000.0 10 > th dose independent rect. 16 6
529 168.48 precipitation 0.1 10 < th dose independent rect. 20 20
530 168.48 precipitation 0.1 10 < th dose dependent rect. 20 20
569 168.69 radiation 40.0 270 < th dose dependent rect. 2 6
583 168.82 precipitation 0.1 270 < th dose independent rect. 1 7
587 168.82 precipitation 0.1 270 < th dose dependent rect. 1 7
617 168.92 atmosphere 1000.0 10 > th dose independent rect. 16 4
626 168.97 atmosphere 1015.0 270 < th dose independent rect. 20 17
713 169.30 humidity 50.0 270 > th dose dependent rect. 1 8
769 169.54 wind 7.0 10 < th dose independent rect. 16 17
776 169.59 humidity 90.0 10 < th dose independent rect. 9 7
811 169.71 wind 9.0 270 < th dose dependent rect. 8 18
879 170.07 wind 1.0 30 > th dose independent rect. 5 15
892 170.13 radiation 40.0 90 < th dose dependent rect. 15 6
972 170.57 radiation 30.0 10 < th dose independent rect. 16 17
974 170.58 atmosphere 1000.0 10 > th dose independent rect. 16 17