Os04g0472400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os04g0472400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71.42 | 0.397 | 2.97 | -0.333 | 0.0995 | -0.18 | -0.128 | 1.61 | -0.118 | 10.4 | 83.95 | 1414 | -- | -- |
| 74.06 | 0.404 | 2.97 | -0.212 | 0.0817 | -0.0582 | -0.331 | -- | -0.0964 | 7.85 | 83.95 | 1414 | -- | -- |
| 71.48 | 0.394 | 2.97 | -0.338 | 0.0995 | -0.184 | -- | 1.63 | -0.118 | 10.9 | 83.94 | 1417 | -- | -- |
| 74.15 | 0.401 | 2.97 | -0.214 | 0.134 | -0.115 | -- | -- | -0.0996 | 10.7 | 83.76 | 1141 | -- | -- |
| 72.08 | 0.395 | 2.98 | -0.342 | -- | -0.201 | -- | 1.68 | -0.12 | -- | 83.99 | 1452 | -- | -- |
| 74.29 | 0.404 | 2.97 | -0.213 | 0.107 | -- | -0.188 | -- | -0.0926 | 10 | -- | -- | -- | -- |
| 74.4 | 0.404 | 2.97 | -0.22 | 0.109 | -- | -- | -- | -0.0924 | 10.8 | -- | -- | -- | -- |
| 74.68 | 0.402 | 2.98 | -0.199 | -- | -0.164 | -- | -- | -0.113 | -- | 89 | 1487 | -- | -- |
| 75.29 | 0.404 | 2.97 | -- | 0.129 | -0.122 | -- | -- | -0.0764 | 11 | 84.64 | 1139 | -- | -- |
| 75.13 | 0.405 | 2.98 | -0.222 | -- | -- | -- | -- | -0.0931 | -- | -- | -- | -- | -- |
| 75.68 | 0.407 | 2.97 | -- | 0.11 | -- | -- | -- | -0.0679 | 11 | -- | -- | -- | -- |
| 75.68 | 0.405 | 2.97 | -- | -- | -0.205 | -- | -- | -0.0923 | -- | 88.95 | 1525 | -- | -- |
| 76.44 | 0.408 | 2.97 | -- | -- | -- | -- | -- | -0.0685 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 66.57 | humidity | 80 | 1440 | < th | dose dependent | rect. | 21 | 10 |
| 3 | 67.28 | humidity | 80 | 1440 | < th | dose dependent | rect. | 20 | 2 |
| 7 | 67.61 | humidity | 80 | 1440 | < th | dose dependent | rect. | 21 | 6 |
| 14 | 67.79 | wind | 1 | 10 | < th | dose dependent | rect. | 6 | 4 |
| 19 | 67.86 | humidity | 60 | 90 | < th | dose dependent | rect. | 17 | 17 |
| 22 | 67.89 | humidity | 60 | 90 | < th | dose independent | rect. | 18 | 15 |
| 27 | 67.91 | humidity | 60 | 30 | < th | dose independent | rect. | 17 | 17 |
| 36 | 67.96 | humidity | 60 | 270 | < th | dose independent | rect. | 8 | 1 |
| 63 | 67.96 | humidity | 60 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 105 | 67.98 | humidity | 60 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 154 | 68.02 | wind | 1 | 10 | < th | dose independent | rect. | 7 | 3 |
| 160 | 68.06 | humidity | 60 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 161 | 68.06 | humidity | 60 | 30 | < th | dose independent | rect. | 9 | 1 |
| 208 | 68.06 | humidity | 60 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 319 | 68.08 | wind | 1 | 10 | < th | dose dependent | rect. | 9 | 3 |
| 320 | 68.09 | wind | 1 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 328 | 68.19 | wind | 1 | 10 | < th | dose independent | rect. | 9 | 1 |
| 332 | 68.23 | radiation | 40 | 30 | > th | dose dependent | rect. | 9 | 1 |
| 352 | 68.24 | humidity | 60 | 1440 | > th | dose independent | rect. | 22 | 11 |
| 355 | 68.25 | humidity | 60 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 358 | 68.26 | wind | 1 | 10 | < th | dose dependent | rect. | 6 | 10 |
| 363 | 68.29 | humidity | 60 | 1440 | > th | dose independent | rect. | 24 | 9 |
| 386 | 68.31 | humidity | 80 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 439 | 68.39 | humidity | 60 | 1440 | > th | dose independent | rect. | 20 | 13 |
| 454 | 68.42 | humidity | 90 | 720 | < th | dose dependent | rect. | 24 | 5 |
| 505 | 68.48 | humidity | 80 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 559 | 68.61 | radiation | 10 | 270 | < th | dose dependent | rect. | 10 | 2 |
| 563 | 68.63 | humidity | 80 | 1440 | < th | dose independent | rect. | 20 | 13 |
| 565 | 68.65 | humidity | 90 | 720 | < th | dose independent | rect. | 24 | 4 |
| 566 | 68.66 | humidity | 80 | 1440 | > th | dose independent | rect. | 20 | 13 |
| 579 | 68.74 | radiation | 20 | 90 | < th | dose dependent | rect. | 10 | 4 |
| 629 | 68.91 | humidity | 80 | 720 | < th | dose independent | rect. | 1 | 1 |
| 654 | 68.97 | humidity | 80 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 665 | 69.00 | humidity | 80 | 1440 | > th | dose independent | rect. | 23 | 8 |
| 761 | 69.22 | humidity | 80 | 1440 | > th | dose independent | rect. | 20 | 7 |
| 815 | 69.31 | radiation | 10 | 90 | < th | dose independent | rect. | 10 | 4 |
| 818 | 69.32 | radiation | 40 | 10 | > th | dose dependent | sin | 12 | NA |
| 819 | 69.32 | humidity | 50 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 832 | 69.36 | humidity | 80 | 1440 | > th | dose independent | sin | 10 | NA |
| 843 | 69.40 | humidity | 80 | 1440 | < th | dose independent | rect. | 20 | 7 |
| 851 | 69.43 | humidity | 80 | 1440 | > th | dose independent | rect. | 23 | 5 |
| 857 | 69.44 | humidity | 50 | 1440 | > th | dose dependent | rect. | 20 | 8 |
| 860 | 69.45 | wind | 9 | 1440 | > th | dose independent | rect. | 18 | 1 |
| 898 | 69.46 | radiation | 40 | 10 | > th | dose independent | rect. | 9 | 1 |
| 931 | 69.47 | radiation | 20 | 270 | < th | dose independent | rect. | 10 | 1 |
| 940 | 69.48 | humidity | 50 | 1440 | > th | dose dependent | rect. | 21 | 5 |
| 958 | 69.49 | wind | 9 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 993 | 69.52 | humidity | 60 | 720 | > th | dose dependent | rect. | 21 | 11 |