Os04g0472100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os04g0472100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 234.81 | 0.714 | -743 | 4560 | 0.0838 | -218000 | 0.238 | 1330000 | -0.0298 | 9.13 | 995 | 10 | -- | -- |
| 232.04 | 0.715 | 2.88 | -0.0623 | 0.0823 | 3.81 | 0.231 | -- | -0.0297 | 9.06 | 995 | 10 | -- | -- |
| 234.99 | 0.714 | -743 | 4560 | 0.0878 | -218000 | -- | 1330000 | -0.0302 | 8.17 | 995 | 10 | -- | -- |
| 230.17 | 0.711 | 2.88 | -0.0507 | 0.078 | 4.25 | -- | -- | -0.0317 | 8.21 | 994.7 | 2 | -- | -- |
| 235.32 | 0.714 | -740 | 4540 | -- | -218000 | -- | 1340000 | -0.0301 | -- | 995 | 10 | -- | -- |
| 247.84 | 0.738 | 2.88 | -0.0365 | 0.0602 | -- | 0.262 | -- | -0.0406 | 11.9 | -- | -- | -- | -- |
| 248.11 | 0.738 | 2.88 | -0.0268 | 0.0646 | -- | -- | -- | -0.0401 | 10.3 | -- | -- | -- | -- |
| 230.5 | 0.71 | 2.88 | -0.05 | -- | 4.23 | -- | -- | -0.0309 | -- | 994.7 | 2 | -- | -- |
| 230.24 | 0.711 | 2.88 | -- | 0.0777 | 4.25 | -- | -- | -0.0261 | 8.26 | 994.7 | 2 | -- | -- |
| 248.36 | 0.736 | 2.88 | -0.0278 | -- | -- | -- | -- | -0.0403 | -- | -- | -- | -- | -- |
| 248.13 | 0.737 | 2.88 | -- | 0.0647 | -- | -- | -- | -0.0371 | 10.3 | -- | -- | -- | -- |
| 230.57 | 0.71 | 2.88 | -- | -- | 4.23 | -- | -- | -0.0254 | -- | 994.7 | 3 | -- | -- |
| 248.38 | 0.736 | 2.88 | -- | -- | -- | -- | -- | -0.0372 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 227.52 | radiation | 10 | 10 | < th | dose dependent | rect. | 10 | 2 |
| 4 | 229.94 | atmosphere | 995 | 10 | > th | dose independent | sin | 6 | NA |
| 11 | 230.34 | atmosphere | 995 | 10 | < th | dose independent | sin | 6 | NA |
| 13 | 230.36 | atmosphere | 995 | 30 | < th | dose dependent | rect. | 18 | 22 |
| 15 | 230.37 | atmosphere | 995 | 30 | < th | dose dependent | sin | 6 | NA |
| 17 | 230.38 | atmosphere | 995 | 90 | < th | dose independent | rect. | 14 | 1 |
| 18 | 230.38 | atmosphere | 995 | 10 | < th | dose independent | rect. | 15 | 1 |
| 145 | 230.38 | atmosphere | 995 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 146 | 230.38 | atmosphere | 995 | 10 | < th | dose dependent | rect. | 15 | 1 |
| 275 | 230.42 | radiation | 1 | 10 | < th | dose independent | rect. | 7 | 5 |
| 280 | 230.46 | radiation | 1 | 90 | < th | dose independent | rect. | 10 | 1 |
| 282 | 230.46 | radiation | 1 | 90 | < th | dose dependent | rect. | 10 | 1 |
| 312 | 231.11 | radiation | 1 | 10 | < th | dose independent | rect. | 11 | 1 |
| 352 | 231.79 | temperature | 30 | 30 | > th | dose dependent | rect. | 16 | 1 |
| 461 | 233.59 | atmosphere | 995 | 30 | > th | dose independent | rect. | 21 | 23 |
| 546 | 235.21 | atmosphere | 995 | 10 | < th | dose dependent | no | NA | NA |
| 757 | 235.30 | temperature | 30 | 10 | > th | dose dependent | sin | 12 | NA |
| 769 | 235.92 | atmosphere | 995 | 10 | < th | dose dependent | sin | 18 | NA |
| 810 | 237.00 | wind | 7 | 30 | < th | dose independent | rect. | 21 | 23 |
| 811 | 237.01 | atmosphere | 995 | 90 | > th | dose independent | rect. | 3 | 23 |
| 846 | 238.10 | temperature | 30 | 10 | > th | dose independent | rect. | 15 | 2 |
| 866 | 238.14 | wind | 7 | 10 | > th | dose dependent | rect. | 9 | 1 |
| 874 | 238.19 | wind | 7 | 10 | > th | dose independent | rect. | 21 | 18 |