Os04g0471700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to WRKY10 (WRKY transcription factor 35).
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Os04g0471700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to WRKY10 (WRKY transcription factor 35).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 74.02 | 0.404 | 3.22 | -0.231 | 0.424 | 3.12 | -0.162 | -8.13 | 0.0219 | 7.29 | 49 | 36 | -- | -- |
| 79.65 | 0.419 | 3.19 | -0.108 | 0.38 | 0.259 | -0.25 | -- | 0.0121 | 7.42 | 49 | 36 | -- | -- |
| 73.28 | 0.402 | 3.23 | -0.24 | 0.406 | 4.92 | -- | -13 | 0.0183 | 7.32 | 49 | 36 | -- | -- |
| 78.9 | 0.414 | 3.19 | -0.132 | 0.397 | 0.397 | -- | -- | 0.0169 | 7.24 | 49.83 | 39 | -- | -- |
| 82.01 | 0.424 | 3.24 | -0.222 | -- | 4.51 | -- | -11.9 | 0.0244 | -- | 49 | 36 | -- | -- |
| 79.94 | 0.419 | 3.19 | -0.0922 | 0.379 | -- | -0.24 | -- | 0.0103 | 7.49 | -- | -- | -- | -- |
| 80.1 | 0.419 | 3.19 | -0.0979 | 0.379 | -- | -- | -- | 0.0107 | 7.48 | -- | -- | -- | -- |
| 87.07 | 0.436 | 3.2 | -0.112 | -- | 0.302 | -- | -- | 0.0212 | -- | 49.98 | 39 | -- | -- |
| 79.34 | 0.415 | 3.18 | -- | 0.393 | 0.359 | -- | -- | 0.0309 | 7.29 | 49.89 | 39 | -- | -- |
| 87.77 | 0.438 | 3.2 | -0.0921 | -- | -- | -- | -- | 0.0167 | -- | -- | -- | -- | -- |
| 80.35 | 0.419 | 3.18 | -- | 0.378 | -- | -- | -- | 0.0216 | 7.5 | -- | -- | -- | -- |
| 87.4 | 0.437 | 3.19 | -- | -- | 0.277 | -- | -- | 0.0331 | -- | 49.98 | 39 | -- | -- |
| 88 | 0.438 | 3.19 | -- | -- | -- | -- | -- | 0.0269 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 66.62 | humidity | 60.0 | 10 | < th | dose independent | rect. | 16 | 1 |
| 2 | 66.64 | humidity | 60.0 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 5 | 66.84 | temperature | 30.0 | 10 | > th | dose dependent | rect. | 16 | 1 |
| 6 | 66.95 | temperature | 30.0 | 10 | > th | dose independent | rect. | 16 | 1 |
| 8 | 67.09 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 16 | 1 |
| 9 | 67.09 | radiation | 10.0 | 10 | > th | dose independent | rect. | 16 | 1 |
| 10 | 67.66 | wind | 5.0 | 10 | < th | dose independent | rect. | 16 | 1 |
| 14 | 69.96 | radiation | 10.0 | 10 | > th | dose dependent | rect. | 16 | 1 |
| 15 | 69.97 | wind | 7.0 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 33 | 72.16 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 34 | 72.16 | radiation | 10.0 | 10 | > th | dose dependent | rect. | 16 | 15 |
| 89 | 73.88 | humidity | 50.0 | 10 | < th | dose independent | rect. | 11 | 6 |
| 142 | 74.05 | radiation | 20.0 | 10 | < th | dose independent | rect. | 16 | 1 |
| 165 | 74.15 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 16 | 1 |
| 169 | 74.20 | radiation | 10.0 | 10 | > th | dose independent | rect. | 16 | 15 |
| 171 | 74.25 | wind | 3.0 | 10 | > th | dose independent | rect. | 16 | 1 |
| 174 | 74.26 | temperature | 10.0 | 10 | > th | dose independent | rect. | 16 | 1 |
| 179 | 74.26 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 16 | 1 |
| 180 | 74.26 | temperature | 10.0 | 10 | > th | dose independent | rect. | 17 | 23 |
| 181 | 74.26 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 190 | 74.82 | humidity | 50.0 | 30 | < th | dose dependent | rect. | 16 | 20 |
| 226 | 75.11 | wind | 9.0 | 10 | < th | dose independent | rect. | 17 | 23 |
| 307 | 75.37 | humidity | 50.0 | 30 | < th | dose dependent | sin | 23 | NA |
| 321 | 75.44 | humidity | 50.0 | 30 | < th | dose dependent | no | NA | NA |
| 479 | 75.48 | humidity | 50.0 | 30 | < th | dose dependent | sin | 14 | NA |
| 497 | 75.55 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 16 | 1 |
| 537 | 76.00 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 541 | 76.07 | humidity | 50.0 | 30 | < th | dose independent | rect. | 16 | 20 |
| 558 | 76.18 | humidity | 90.0 | 30 | < th | dose independent | rect. | 3 | 2 |
| 578 | 76.23 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 3 | 2 |
| 605 | 76.52 | humidity | 50.0 | 10 | > th | dose independent | sin | 12 | NA |
| 609 | 76.55 | humidity | 50.0 | 90 | < th | dose independent | sin | 6 | NA |
| 692 | 76.64 | humidity | 50.0 | 30 | > th | dose independent | rect. | 23 | 23 |
| 730 | 76.70 | humidity | 50.0 | 30 | < th | dose independent | sin | 21 | NA |
| 737 | 76.72 | humidity | 50.0 | 30 | < th | dose independent | no | NA | NA |
| 906 | 76.76 | humidity | 50.0 | 30 | < th | dose independent | sin | 14 | NA |
| 922 | 76.79 | wind | 1.0 | 10 | > th | dose dependent | rect. | 16 | 1 |
| 982 | 76.93 | wind | 9.0 | 43200 | > th | dose independent | rect. | 11 | 21 |
| 983 | 76.93 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 3 | 1 |
| 985 | 76.93 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 11 | 20 |
| 986 | 76.94 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 3 | 1 |
| 987 | 76.95 | wind | 9.0 | 43200 | > th | dose independent | rect. | 14 | 17 |
| 990 | 76.96 | wind | 9.0 | 43200 | < th | dose independent | rect. | 11 | 21 |
| 996 | 76.98 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 999 | 76.99 | wind | 9.0 | 43200 | < th | dose independent | rect. | 14 | 18 |