Os04g0471300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0471300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67.84 | 0.387 | 12.4 | -0.429 | 1.46 | -1.03 | 0.879 | -0.222 | -0.164 | 5.81 | 24.44 | 15 | -- | -- |
| 67.86 | 0.384 | 12.4 | -0.402 | 1.46 | -1.05 | 0.905 | -- | -0.157 | 5.81 | 24.46 | 14 | -- | -- |
| 69.43 | 0.388 | 12.4 | -0.475 | 1.45 | -1.06 | -- | -0.744 | -0.169 | 5.92 | 24.2 | 14 | -- | -- |
| 69.72 | 0.389 | 12.4 | -0.387 | 1.45 | -1.13 | -- | -- | -0.151 | 5.95 | 24.43 | 14 | -- | -- |
| 135.4 | 0.542 | 12.3 | 0.224 | -- | -2.24 | -- | 2.66 | 0.126 | -- | 24.3 | 249 | -- | -- |
| 84.05 | 0.43 | 12.4 | -0.566 | 1.78 | -- | 1.45 | -- | -0.266 | 5.18 | -- | -- | -- | -- |
| 89.3 | 0.443 | 12.4 | -0.565 | 1.79 | -- | -- | -- | -0.273 | 5.25 | -- | -- | -- | -- |
| 138.04 | 0.547 | 12.4 | -0.106 | -- | -2.02 | -- | -- | -0.019 | -- | 24.3 | 206 | -- | -- |
| 73.33 | 0.399 | 12.4 | -- | 1.41 | -1.23 | -- | -- | -0.0882 | 6.04 | 24.2 | 14 | -- | -- |
| 257.13 | 0.749 | 12.4 | -0.503 | -- | -- | -- | -- | -0.228 | -- | -- | -- | -- | -- |
| 97.72 | 0.462 | 12.4 | -- | 1.78 | -- | -- | -- | -0.21 | 5.27 | -- | -- | -- | -- |
| 138.55 | 0.548 | 12.4 | -- | -- | -2.09 | -- | -- | -0.0141 | -- | 24.2 | 206 | -- | -- |
| 263.8 | 0.758 | 12.4 | -- | -- | -- | -- | -- | -0.172 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.65 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 10 |
| 3 | 60.86 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 19 |
| 6 | 61.45 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 17 |
| 26 | 62.70 | temperature | 25 | 90 | > th | dose dependent | sin | 4 | NA |
| 42 | 63.06 | temperature | 25 | 720 | < th | dose independent | rect. | 8 | 3 |
| 45 | 63.10 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 6 |
| 49 | 63.15 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 10 |
| 50 | 63.16 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 4 |
| 59 | 63.30 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 17 |
| 86 | 63.60 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 137 | 64.02 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 17 |
| 167 | 64.26 | temperature | 30 | 90 | < th | dose dependent | sin | 0 | NA |
| 201 | 64.49 | temperature | 25 | 270 | < th | dose independent | sin | 2 | NA |
| 241 | 64.70 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 10 |
| 244 | 64.71 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 22 |
| 273 | 64.93 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 2 |
| 321 | 65.19 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 4 |
| 332 | 65.26 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 336 | 65.27 | temperature | 30 | 720 | < th | dose dependent | sin | 4 | NA |
| 339 | 65.30 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 8 |
| 372 | 65.44 | temperature | 25 | 270 | < th | dose independent | rect. | 8 | 10 |
| 409 | 65.63 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 486 | 65.99 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 496 | 66.01 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 514 | 66.05 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 10 |
| 526 | 66.10 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 610 | 66.35 | temperature | 25 | 270 | > th | dose independent | sin | 3 | NA |
| 796 | 66.83 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 5 |
| 975 | 67.26 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 17 |