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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0470600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.04 (0.0318) R2 : 0.808
β1 : -2.04 (0.116) R2dD : 0.135 R2D : 0.0635
β2 : 2.81 (0.0769) R2dC : 0.562 R2C : 0.554
β3 : 1.38 (0.102) R2dE : 0.0767 R2E : 0.064
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.743 (0.0678) R2dN8 : 0.0692 R2N8 : 0.029
σ : 0.593
deviance : 162.11
__
_____
C
peak time of C : 22
E
wheather : radiation
threshold : 0.59
memory length : 105
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 21.1
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
153.18 0.582 6.04 -2.01 2.78 1.39 0.76 1.96 -0.757 21.9 0.7651 103 21.8 --
159.23 0.588 6.04 -2.03 2.81 1.41 0.763 -- -0.752 21.9 0.58 106 21.2 --
155.3 0.58 6.04 -2.05 2.78 1.38 -- 2.08 -0.757 21.8 0.78 101 22 --
162.11 0.593 6.04 -2.04 2.81 1.38 -- -- -0.743 22 0.59 105 21.1 --
276.49 0.779 5.97 -2 -- 2.28 -- 0.891 -0.764 -- 1.716 2 6.58 --
188.77 0.644 6.05 -2.02 2.88 -- 1.18 -- -0.836 23 -- -- -- --
194.66 0.653 6.05 -2.07 2.88 -- -- -- -0.84 23 -- -- -- --
194.67 0.65 5.99 -2.07 -- 2.87 -- -- -0.841 -- 60 5 7.05 --
272.96 0.769 6.04 -- 2.79 1.29 -- -- -0.6 22.1 0.5301 102 20.4 --
709.97 1.25 5.98 -2 -- -- -- -- -0.818 -- -- -- -- --
307.47 0.82 6 -- 2.86 -- -- -- -0.609 22.9 -- -- -- --
307.37 0.819 5.93 -- -- 2.86 -- -- -0.61 -- 60 5 7.05 --
815.95 1.33 5.93 -- -- -- -- -- -0.596 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 153.72 radiation 1.0 90 < th dose independent sin 4 NA
2 154.15 radiation 1.0 90 < th dose dependent sin 3 NA
6 154.75 temperature 15.0 90 > th dose dependent rect. 5 8
9 155.80 radiation 1.0 90 > th dose independent sin 3 NA
13 156.60 radiation 1.0 90 < th dose independent rect. 2 13
22 157.22 radiation 1.0 90 < th dose independent rect. 2 6
27 157.56 radiation 1.0 90 > th dose independent rect. 4 11
57 158.34 radiation 1.0 90 < th dose dependent rect. 2 13
58 158.36 temperature 10.0 270 > th dose dependent rect. 3 9
59 158.37 radiation 1.0 90 < th dose dependent rect. 2 15
60 158.43 temperature 15.0 10 > th dose dependent rect. 6 8
67 158.59 radiation 10.0 30 < th dose dependent rect. 2 9
69 158.64 radiation 1.0 270 < th dose independent rect. 23 16
87 158.89 atmosphere 1000.0 270 > th dose independent rect. 17 7
99 159.02 radiation 1.0 270 < th dose dependent rect. 23 16
101 159.07 radiation 10.0 270 < th dose dependent rect. 23 12
171 160.15 atmosphere 1015.0 90 < th dose independent rect. 14 15
202 160.46 atmosphere 1000.0 30 > th dose independent rect. 19 7
210 160.59 temperature 25.0 10 > th dose independent rect. 6 7
243 160.89 atmosphere 1015.0 270 < th dose independent rect. 23 6
273 161.22 atmosphere 995.0 270 > th dose independent rect. 5 18
287 161.42 wind 5.0 270 < th dose independent rect. 23 6
306 161.76 wind 1.0 270 > th dose independent rect. 24 5
310 161.80 wind 5.0 270 < th dose independent rect. 1 2
336 162.13 wind 5.0 270 < th dose independent rect. 24 4
343 162.23 temperature 30.0 10 < th dose dependent rect. 2 12
354 162.32 temperature 10.0 90 > th dose dependent rect. 14 15
359 162.37 atmosphere 1005.0 10 > th dose independent rect. 2 4
360 162.37 atmosphere 1015.0 10 < th dose independent rect. 15 15
377 162.46 wind 9.0 270 < th dose dependent rect. 1 2
381 162.47 radiation 40.0 90 < th dose independent rect. 13 16
382 162.48 wind 1.0 270 > th dose independent rect. 1 2
385 162.49 temperature 15.0 270 > th dose independent rect. 5 18
395 162.60 wind 7.0 10 < th dose independent rect. 6 20
405 162.69 wind 9.0 10 < th dose dependent rect. 6 20
418 162.83 temperature 10.0 270 > th dose independent rect. 23 6
419 162.83 temperature 30.0 270 < th dose independent rect. 23 6
420 162.83 humidity 50.0 270 > th dose independent rect. 23 6
423 162.83 atmosphere 995.0 270 > th dose independent rect. 23 6
424 162.83 radiation 20.0 270 < th dose independent rect. 23 6
436 162.85 temperature 15.0 270 > th dose independent rect. 3 22
446 162.92 precipitation 0.1 270 < th dose independent rect. 3 10
447 162.92 precipitation 0.1 270 < th dose dependent rect. 3 10
454 162.95 temperature 15.0 10 > th dose independent rect. 6 20
461 163.03 wind 7.0 10 < th dose independent rect. 2 4
467 163.05 temperature 10.0 10 > th dose independent rect. 2 4
469 163.05 temperature 30.0 10 < th dose independent rect. 2 4
470 163.05 humidity 50.0 10 > th dose independent rect. 2 4
473 163.05 atmosphere 995.0 10 > th dose independent rect. 2 4
474 163.05 atmosphere 1010.0 10 < th dose independent rect. 2 4
476 163.05 radiation 20.0 10 < th dose independent rect. 2 4
497 163.07 wind 9.0 270 < th dose independent rect. 5 18
514 163.14 temperature 30.0 10 < th dose dependent rect. 2 10
532 163.24 temperature 10.0 270 > th dose independent rect. 1 2
534 163.24 temperature 30.0 270 < th dose independent rect. 1 2
535 163.24 humidity 50.0 270 > th dose independent rect. 1 2
538 163.24 atmosphere 995.0 270 > th dose independent rect. 1 2
539 163.24 atmosphere 1010.0 270 < th dose independent rect. 1 2
541 163.24 radiation 1.0 270 < th dose independent rect. 1 2
548 163.24 radiation 1.0 270 < th dose dependent rect. 1 2
558 163.27 precipitation 0.1 270 < th dose independent rect. 1 2
559 163.27 precipitation 0.1 270 < th dose dependent rect. 1 2
567 163.35 temperature 25.0 30 < th dose independent rect. 3 11
577 163.41 wind 9.0 30 < th dose dependent rect. 6 9
579 163.44 atmosphere 1015.0 1440 < th dose independent rect. 3 4
581 163.44 atmosphere 995.0 30 > th dose dependent rect. 19 7
602 163.52 wind 9.0 270 < th dose dependent rect. 24 4
627 163.59 temperature 25.0 30 < th dose independent rect. 3 9
631 163.60 wind 9.0 270 < th dose independent rect. 3 22
636 163.61 radiation 10.0 10 < th dose dependent rect. 2 15
643 163.65 atmosphere 1005.0 270 > th dose independent rect. 1 2
681 163.71 wind 9.0 270 < th dose dependent rect. 23 6
711 163.85 wind 9.0 1440 < th dose independent rect. 3 4
712 163.85 temperature 10.0 1440 > th dose independent rect. 3 4
715 163.85 temperature 30.0 1440 < th dose independent rect. 3 4
719 163.85 humidity 50.0 1440 > th dose independent rect. 3 4
724 163.85 atmosphere 995.0 1440 > th dose independent rect. 3 4
725 163.85 radiation 40.0 1440 < th dose independent rect. 3 4
730 163.85 temperature 10.0 1440 > th dose independent rect. 7 20
733 163.85 atmosphere 995.0 10 > th dose independent rect. 6 20
781 163.95 humidity 90.0 10 < th dose independent rect. 6 9
782 163.95 wind 9.0 270 < th dose independent rect. 13 14
798 164.01 precipitation 0.1 30 < th dose independent rect. 2 4
801 164.01 precipitation 0.1 30 < th dose dependent rect. 2 4
805 164.02 precipitation 0.1 270 < th dose independent rect. 23 6
807 164.02 precipitation 0.1 270 < th dose dependent rect. 23 6
835 164.10 wind 9.0 10 < th dose dependent rect. 2 4
845 164.14 temperature 10.0 270 > th dose dependent rect. 23 6
857 164.21 precipitation 0.1 270 < th dose independent rect. 13 14
859 164.21 precipitation 0.1 270 < th dose dependent rect. 13 14
872 164.26 temperature 10.0 270 > th dose dependent rect. 1 2
880 164.29 temperature 25.0 30 < th dose independent rect. 2 6
883 164.30 wind 9.0 270 < th dose independent rect. 3 10
931 164.47 temperature 30.0 10 < th dose dependent rect. 19 7
937 164.51 atmosphere 995.0 10 > th dose dependent rect. 2 4
944 164.55 atmosphere 995.0 270 > th dose dependent rect. 17 7
968 164.63 temperature 30.0 10 < th dose dependent rect. 2 15