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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0470500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Disease resistance protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.27 (0.0338) R2 : 0.452
β1 : 2.24 (0.124) R2dD : 0.412 R2D : 0.379
β2 : 0.568 (0.0876) R2dC : 0.0509 R2C : 0.0506
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.245 (0.0721) R2dN8 : 0.0186 R2N8 : -0.0141
σ : 0.635
deviance : 183.74
__
_____
C
peak time of C : 6.93
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
163.88 0.601 5.17 2.91 0.361 0.553 0.173 -1.52 0.654 8.33 24.4 273 -- --
172.83 0.612 5.24 2.63 0.428 0.487 -0.134 -- 0.492 8.48 24.4 269 -- --
163.97 0.596 5.17 2.9 0.36 0.552 -- -1.5 0.651 8.31 24.42 274 -- --
171.44 0.61 5.22 2.48 0.386 0.53 -- -- 0.496 8.15 24.4 291 -- --
168.18 0.604 5.17 2.95 -- 0.71 -- -1.72 0.698 -- 24.9 405 -- --
183.53 0.635 5.27 2.25 0.57 -- -0.292 -- 0.244 6.82 -- -- -- --
183.74 0.635 5.27 2.24 0.568 -- -- -- 0.245 6.93 -- -- -- --
175.34 0.617 5.22 2.44 -- 0.652 -- -- 0.53 -- 25.17 420 -- --
316.34 0.833 5.33 -- 0.611 -0.0526 -- -- -0.0313 6.51 24.9 111 -- --
200.68 0.662 5.28 2.26 -- -- -- -- 0.256 -- -- -- -- --
316.54 0.832 5.32 -- 0.595 -- -- -- -0.00514 6.69 -- -- -- --
326.49 0.842 5.31 -- -- 0.357 -- -- 0.141 -- 25.47 380 -- --
335.01 0.854 5.34 -- -- -- -- -- 0.00516 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 160.47 humidity 90 270 < th dose independent rect. 23 21
3 161.22 humidity 60 10 > th dose dependent rect. 5 21
17 163.58 humidity 70 270 > th dose dependent rect. 3 21
25 164.13 temperature 25 270 > th dose independent rect. 22 22
28 164.32 humidity 80 30 > th dose independent rect. 5 21
29 164.35 humidity 90 270 > th dose independent rect. 3 21
30 164.45 temperature 25 270 < th dose independent rect. 13 22
34 164.55 temperature 25 270 < th dose independent rect. 3 23
36 164.58 temperature 25 270 < th dose independent rect. 1 23
38 164.63 temperature 25 270 < th dose independent rect. 11 23
70 165.28 temperature 25 270 < th dose independent no NA NA
78 165.36 temperature 25 270 < th dose independent rect. 19 23
79 165.36 temperature 30 10 < th dose dependent rect. 5 21
85 165.53 temperature 25 270 < th dose independent rect. 21 23
93 165.73 temperature 25 270 > th dose independent rect. 10 23
94 165.73 temperature 25 270 > th dose independent rect. 12 23
100 165.88 temperature 25 270 > th dose independent rect. 6 23
136 166.31 temperature 25 270 > th dose independent no NA NA
138 166.35 temperature 10 270 > th dose dependent rect. 6 22
163 166.59 temperature 25 270 > th dose independent rect. 18 23
200 166.99 humidity 80 90 > th dose dependent rect. 5 15
225 167.33 humidity 90 270 > th dose independent rect. 22 23
240 167.44 atmosphere 1005 10 > th dose dependent rect. 2 3
264 167.63 humidity 90 270 > th dose independent rect. 16 21
266 167.65 humidity 90 90 > th dose independent rect. 5 15
268 167.65 atmosphere 1005 90 > th dose dependent rect. 2 2
301 167.86 humidity 90 270 < th dose independent rect. 10 23
312 167.95 humidity 90 270 > th dose independent no NA NA
330 168.06 humidity 90 270 > th dose independent rect. 11 23
331 168.06 humidity 90 270 > th dose dependent sin 22 NA
352 168.16 humidity 70 270 > th dose dependent rect. 15 22
359 168.21 humidity 90 270 < th dose independent rect. 6 23
368 168.29 temperature 20 90 < th dose independent rect. 18 1
374 168.31 humidity 90 270 > th dose independent rect. 19 23
375 168.32 temperature 20 90 < th dose dependent rect. 18 1
383 168.36 temperature 20 10 < th dose dependent rect. 18 2
387 168.40 temperature 15 10 > th dose independent rect. 5 21
401 168.46 temperature 15 90 > th dose dependent rect. 1 22
403 168.48 humidity 90 270 < th dose independent no NA NA
443 168.64 wind 3 30 < th dose dependent rect. 2 3
451 168.71 temperature 15 10 > th dose dependent rect. 9 20
456 168.74 humidity 90 270 > th dose independent sin 21 NA
473 168.79 humidity 70 270 > th dose dependent no NA NA
513 168.95 temperature 20 720 > th dose dependent rect. 15 3
529 169.01 temperature 20 10 < th dose dependent rect. 12 9
537 169.04 humidity 90 270 < th dose independent rect. 7 12
545 169.08 humidity 70 270 > th dose dependent rect. 19 23
562 169.17 radiation 1 270 < th dose dependent rect. 3 21
568 169.19 temperature 20 30 < th dose dependent rect. 16 5
578 169.23 radiation 1 270 < th dose independent rect. 3 22
579 169.23 humidity 90 270 > th dose independent rect. 7 23
583 169.24 temperature 20 90 > th dose dependent rect. 1 3
604 169.33 atmosphere 1005 10 > th dose independent rect. 2 3
647 169.48 temperature 25 1440 < th dose independent rect. 11 16
653 169.49 temperature 25 1440 < th dose independent rect. 13 14
660 169.51 temperature 15 10 > th dose dependent rect. 2 3
662 169.52 temperature 20 270 > th dose dependent rect. 21 23
697 169.63 temperature 25 1440 > th dose independent rect. 13 14
701 169.64 atmosphere 1005 90 > th dose independent rect. 2 1
724 169.71 temperature 15 90 > th dose dependent rect. 2 1
728 169.72 humidity 90 270 < th dose independent sin 23 NA
745 169.78 humidity 90 270 > th dose dependent rect. 11 9
762 169.83 temperature 20 270 > th dose dependent rect. 13 23
763 169.84 temperature 25 1440 > th dose independent rect. 11 16
765 169.85 temperature 25 1440 < th dose independent rect. 21 19
767 169.85 temperature 30 270 < th dose dependent rect. 14 21
778 169.89 temperature 25 720 < th dose independent rect. 7 19
827 169.98 temperature 20 270 > th dose dependent no NA NA
862 170.07 temperature 25 1440 > th dose independent rect. 21 19
875 170.09 temperature 20 1440 > th dose dependent rect. 15 1
931 170.20 humidity 90 90 > th dose dependent rect. 18 1
959 170.26 humidity 90 90 > th dose independent rect. 18 1
962 170.26 humidity 90 270 < th dose independent rect. 15 23
969 170.27 radiation 30 10 < th dose dependent rect. 5 21