Os04g0470300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function UPF0136, Transmembrane family protein.
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Os04g0470300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function UPF0136, Transmembrane family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.69 | 0.26 | 10.2 | 0.433 | 0.356 | 0.496 | -0.435 | 0.0464 | 0.0687 | 22.1 | 20.63 | 1340 | -- | -- |
| 30.69 | 0.258 | 10.2 | 0.427 | 0.355 | 0.487 | -0.428 | -- | 0.0697 | 22.1 | 20.6 | 1322 | -- | -- |
| 31.41 | 0.261 | 10.2 | 0.432 | 0.353 | 0.489 | -- | 0.00149 | 0.0705 | 21.9 | 20.72 | 1306 | -- | -- |
| 31.4 | 0.261 | 10.2 | 0.436 | 0.353 | 0.488 | -- | -- | 0.0669 | 22 | 20.7 | 1302 | -- | -- |
| 37.49 | 0.285 | 10.2 | 0.405 | -- | 0.479 | -- | -0.144 | 0.0576 | -- | 20.8 | 859 | -- | -- |
| 36.29 | 0.282 | 10.1 | 0.626 | 0.37 | -- | -0.428 | -- | 0.181 | 22.3 | -- | -- | -- | -- |
| 37.02 | 0.285 | 10.1 | 0.644 | 0.373 | -- | -- | -- | 0.182 | 22.2 | -- | -- | -- | -- |
| 37.58 | 0.286 | 10.1 | 0.448 | -- | 0.511 | -- | -- | 0.0632 | -- | 20.8 | 868 | -- | -- |
| 33.34 | 0.269 | 10.2 | -- | 0.384 | 0.797 | -- | -- | -0.0102 | 22 | 18.3 | 4165 | -- | -- |
| 45.45 | 0.315 | 10.1 | 0.649 | -- | -- | -- | -- | 0.183 | -- | -- | -- | -- | -- |
| 47.95 | 0.324 | 10.1 | -- | 0.376 | -- | -- | -- | 0.111 | 22.3 | -- | -- | -- | -- |
| 41.11 | 0.299 | 10.2 | -- | -- | 0.929 | -- | -- | -0.00881 | -- | 18.21 | 3826 | -- | -- |
| 56.57 | 0.351 | 10.1 | -- | -- | -- | -- | -- | 0.111 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.11 | wind | 3.0 | 43200 | > th | dose independent | rect. | 1 | 2 |
| 2 | 27.12 | wind | 3.0 | 43200 | < th | dose independent | rect. | 1 | 2 |
| 3 | 27.15 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 4 | 27.16 | wind | 9.0 | 14400 | < th | dose independent | rect. | 5 | 8 |
| 12 | 27.55 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 5 |
| 13 | 27.56 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 5 |
| 14 | 27.56 | wind | 9.0 | 14400 | < th | dose independent | rect. | 23 | 14 |
| 29 | 27.82 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 36 | 27.87 | wind | 3.0 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 37 | 27.88 | wind | 3.0 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 63 | 28.08 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 64 | 28.09 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 70 | 28.11 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 10 | 3 |
| 72 | 28.13 | wind | 9.0 | 14400 | > th | dose independent | rect. | 5 | 8 |
| 97 | 28.22 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 5 |
| 100 | 28.23 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 13 |
| 112 | 28.28 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 13 |
| 121 | 28.30 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 13 |
| 122 | 28.30 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 1 | 12 |
| 128 | 28.33 | wind | 9.0 | 14400 | > th | dose independent | rect. | 23 | 14 |
| 132 | 28.35 | wind | 7.0 | 14400 | < th | dose dependent | rect. | 1 | 5 |
| 147 | 28.38 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 3 | 3 |
| 150 | 28.39 | wind | 7.0 | 14400 | > th | dose independent | rect. | 11 | 2 |
| 175 | 28.43 | wind | 3.0 | 14400 | < th | dose independent | sin | 8 | NA |
| 185 | 28.44 | wind | 9.0 | 14400 | < th | dose independent | sin | 6 | NA |
| 186 | 28.44 | wind | 9.0 | 14400 | > th | dose independent | rect. | 9 | 3 |
| 195 | 28.45 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 3 | 3 |
| 205 | 28.47 | wind | 3.0 | 14400 | > th | dose independent | sin | 8 | NA |
| 235 | 28.50 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 241 | 28.51 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 1 | 3 |
| 338 | 28.63 | wind | 1.0 | 14400 | > th | dose dependent | sin | 7 | NA |
| 365 | 28.66 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 402 | 28.70 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 23 | 14 |
| 424 | 28.73 | wind | 9.0 | 14400 | < th | dose dependent | sin | 7 | NA |
| 529 | 28.85 | wind | 9.0 | 14400 | < th | dose independent | rect. | 19 | 19 |
| 623 | 28.97 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 11 |
| 637 | 28.98 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 11 |
| 642 | 28.98 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 11 |
| 654 | 29.00 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 704 | 29.09 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 710 | 29.09 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 5 |
| 737 | 29.14 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 743 | 29.15 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 5 |
| 788 | 29.21 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 5 |
| 862 | 29.29 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 892 | 29.32 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 896 | 29.32 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 907 | 29.33 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 910 | 29.33 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 917 | 29.34 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 935 | 29.35 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 941 | 29.35 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 943 | 29.35 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 9 | 5 |
| 962 | 29.37 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 6 | 1 |