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Os04g0469400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tetratricopeptide-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.84 (0.0257) R2 : 0.706
β1 : 1.1 (0.0943) R2dD : 0.092 R2D : 0.0889
β2 : 1.95 (0.0651) R2dC : 0.577 R2C : 0.566
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.325 (0.055) R2dN8 : 0.0302 R2N8 : 0.0469
σ : 0.484
deviance : 106.81
__
_____
C
peak time of C : 15.7
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
92.41 0.452 10.1 6.28 1.96 161 0.128 334 -0.23 15.7 15 4510 -- --
100.99 0.472 7.83 1.17 1.96 1.69 0.184 -- -0.309 15.7 15 4510 -- --
92.34 0.448 10 6.09 1.98 163 -- 339 -0.219 15.7 14.95 4509 -- --
101.09 0.471 7.83 1.17 1.96 1.72 -- -- -0.307 15.7 14.95 4509 -- --
304.86 0.813 10 6.02 -- 164 -- 340 -0.289 -- 14.94 4267 -- --
106.47 0.484 7.84 1.1 1.94 -- 0.342 -- -0.327 15.7 -- -- -- --
106.81 0.484 7.84 1.1 1.95 -- -- -- -0.325 15.7 -- -- -- --
304.87 0.813 7.8 1.38 -- 1.18 -- -- -0.252 -- 18.7 2693 -- --
136.32 0.544 7.83 -- 1.97 -0.733 -- -- -0.516 15.8 19.65 5384 -- --
315.89 0.83 7.83 1.02 -- -- -- -- -0.377 -- -- -- -- --
138.96 0.551 7.86 -- 1.92 -- -- -- -0.448 15.8 -- -- -- --
241.21 0.726 7.93 -- -- -2.31 -- -- -0.799 -- 31.97 1824 -- --
343.53 0.865 7.86 -- -- -- -- -- -0.49 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 89.33 temperature 15.0 270 > th dose dependent rect. 4 12
2 89.37 temperature 20.0 720 < th dose independent rect. 18 4
7 89.52 temperature 20.0 14400 > th dose independent rect. 20 1
8 89.56 temperature 20.0 14400 < th dose independent rect. 21 1
20 89.85 humidity 90.0 14400 < th dose independent rect. 17 1
26 90.09 temperature 20.0 720 < th dose dependent rect. 21 1
27 90.15 wind 5.0 14400 < th dose independent rect. 7 1
31 90.22 wind 5.0 14400 > th dose independent rect. 7 1
45 90.48 temperature 25.0 14400 < th dose dependent rect. 17 1
48 90.53 temperature 20.0 720 < th dose independent rect. 12 11
61 90.77 wind 5.0 14400 > th dose dependent rect. 7 1
85 90.96 wind 9.0 14400 < th dose independent rect. 20 15
93 91.02 wind 9.0 14400 > th dose independent rect. 20 15
94 91.03 humidity 80.0 14400 > th dose dependent rect. 17 1
96 91.05 temperature 20.0 1440 > th dose independent rect. 12 10
98 91.05 wind 9.0 14400 > th dose dependent rect. 20 15
105 91.11 wind 5.0 14400 > th dose independent rect. 5 4
107 91.11 temperature 15.0 4320 < th dose dependent rect. 3 19
114 91.14 temperature 20.0 1440 < th dose dependent rect. 15 7
122 91.19 wind 5.0 14400 < th dose independent rect. 5 4
181 91.47 wind 5.0 14400 > th dose dependent rect. 19 14
214 91.59 temperature 15.0 270 > th dose dependent sin 2 NA
216 91.59 temperature 15.0 4320 < th dose dependent rect. 4 15
227 91.63 humidity 90.0 4320 > th dose dependent rect. 13 1
272 91.80 wind 5.0 14400 > th dose independent rect. 19 14
285 91.85 wind 5.0 14400 < th dose independent rect. 19 14
293 91.87 wind 5.0 14400 > th dose dependent rect. 5 4
300 91.89 temperature 15.0 4320 < th dose dependent sin 0 NA
306 91.91 wind 9.0 14400 > th dose dependent sin 10 NA
326 91.98 humidity 90.0 14400 < th dose independent rect. 10 12
331 92.00 temperature 25.0 14400 < th dose dependent rect. 9 1
332 92.01 humidity 90.0 14400 < th dose independent rect. 21 1
341 92.03 humidity 90.0 14400 > th dose independent rect. 9 2
342 92.03 wind 9.0 14400 > th dose dependent rect. 17 15
360 92.08 temperature 25.0 14400 < th dose dependent sin 21 NA
383 92.14 humidity 90.0 14400 < th dose independent rect. 12 10
385 92.15 temperature 20.0 14400 > th dose independent sin 18 NA
392 92.16 humidity 90.0 14400 < th dose independent rect. 9 10
398 92.18 temperature 20.0 720 < th dose independent sin 18 NA
399 92.18 humidity 90.0 14400 > th dose independent rect. 21 1
428 92.22 precipitation 0.1 4320 < th dose independent rect. 6 12
430 92.22 precipitation 0.1 4320 < th dose dependent rect. 6 12
434 92.23 humidity 90.0 14400 > th dose independent rect. 9 5
440 92.23 temperature 15.0 4320 < th dose dependent rect. 6 4
452 92.25 temperature 10.0 720 > th dose dependent rect. 3 6
493 92.34 humidity 90.0 14400 < th dose independent rect. 16 6
507 92.36 wind 9.0 14400 > th dose independent rect. 19 12
527 92.39 precipitation 0.1 4320 > th dose independent rect. 6 12
544 92.42 humidity 90.0 1440 > th dose dependent rect. 13 7
550 92.43 humidity 90.0 14400 < th dose independent rect. 10 1
563 92.44 humidity 90.0 14400 > th dose independent rect. 9 13
577 92.47 humidity 90.0 1440 > th dose independent rect. 16 2
586 92.49 humidity 90.0 14400 < th dose independent rect. 12 7
598 92.50 temperature 30.0 90 < th dose dependent rect. 7 8
647 92.57 wind 9.0 14400 > th dose independent rect. 17 15
676 92.60 radiation 40.0 720 < th dose dependent rect. 24 10
679 92.62 temperature 20.0 1440 > th dose independent sin 20 NA
694 92.64 temperature 30.0 90 < th dose dependent rect. 7 6
728 92.68 humidity 90.0 14400 > th dose dependent rect. 9 13
730 92.69 wind 9.0 14400 > th dose independent sin 10 NA
732 92.69 humidity 90.0 14400 > th dose independent rect. 9 10
769 92.73 humidity 90.0 14400 > th dose dependent rect. 9 2
774 92.75 wind 9.0 14400 < th dose independent sin 10 NA
784 92.76 humidity 90.0 14400 > th dose dependent rect. 21 1
809 92.80 humidity 90.0 14400 > th dose independent rect. 12 10
830 92.83 temperature 15.0 4320 < th dose dependent rect. 5 10
834 92.84 precipitation 0.1 4320 < th dose independent rect. 13 5
839 92.84 humidity 90.0 1440 > th dose dependent rect. 15 3
840 92.84 precipitation 0.1 4320 < th dose dependent rect. 13 5
844 92.85 radiation 30.0 720 < th dose independent rect. 24 10
858 92.87 precipitation 0.1 4320 < th dose independent rect. 9 9
860 92.87 precipitation 0.1 4320 < th dose dependent rect. 9 9
863 92.88 temperature 20.0 14400 < th dose independent sin 17 NA
866 92.88 precipitation 0.1 4320 > th dose independent rect. 13 5
867 92.88 temperature 25.0 270 < th dose independent rect. 6 6
874 92.88 temperature 15.0 4320 < th dose dependent rect. 18 23
876 92.89 temperature 15.0 4320 < th dose dependent no NA NA
881 92.89 temperature 15.0 4320 < th dose dependent rect. 9 22
882 92.89 temperature 15.0 4320 < th dose dependent rect. 15 22
886 92.89 temperature 15.0 4320 < th dose dependent rect. 11 23
898 92.90 temperature 15.0 4320 < th dose dependent rect. 15 20
920 92.91 temperature 15.0 4320 < th dose dependent rect. 18 19
942 92.93 temperature 15.0 4320 < th dose dependent rect. 18 17
950 92.94 precipitation 0.1 14400 < th dose independent rect. 17 2
956 92.94 precipitation 0.1 14400 < th dose dependent rect. 17 2
957 92.94 temperature 15.0 4320 < th dose dependent rect. 5 7
970 92.95 humidity 90.0 14400 > th dose independent rect. 17 1
992 92.96 temperature 15.0 4320 < th dose dependent rect. 14 17