Os04g0467700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Indole-3-glycerol phosphate synthase, chloroplast precursor (EC 4.1.1.48) (IGPS).
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Os04g0467700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Indole-3-glycerol phosphate synthase, chloroplast precursor (EC 4.1.1.48) (IGPS).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.66 | 0.256 | 13.3 | -0.581 | 1.07 | 0.501 | 0.163 | 0.567 | -0.327 | 22.3 | 7.377 | 162 | -- | -- |
| 30.03 | 0.255 | 13.3 | -0.587 | 1.08 | 0.472 | -0.0542 | -- | -0.329 | 22.1 | 7.159 | 89 | -- | -- |
| 29.7 | 0.254 | 13.3 | -0.583 | 1.09 | 0.514 | -- | 0.41 | -0.328 | 22.4 | 4.666 | 161 | -- | -- |
| 29.97 | 0.255 | 13.3 | -0.571 | 1.11 | 0.509 | -- | -- | -0.319 | 22.1 | 4.843 | 71 | -- | -- |
| 51.01 | 0.333 | 13.3 | -0.672 | -- | 0.956 | -- | -0.175 | -0.431 | -- | -9.836 | 955 | -- | -- |
| 33.39 | 0.271 | 13.3 | -0.573 | 0.919 | -- | -0.0319 | -- | -0.301 | 21.5 | -- | -- | -- | -- |
| 33.39 | 0.271 | 13.3 | -0.571 | 0.919 | -- | -- | -- | -0.301 | 21.5 | -- | -- | -- | -- |
| 51.04 | 0.333 | 13.3 | -0.653 | -- | 0.96 | -- | -- | -0.429 | -- | -106.9 | 955 | -- | -- |
| 38.56 | 0.289 | 13.2 | -- | 1.12 | 0.516 | -- | -- | -0.255 | 22.1 | 3.699 | 68 | -- | -- |
| 83.08 | 0.426 | 13.2 | -0.565 | -- | -- | -- | -- | -0.304 | -- | -- | -- | -- | -- |
| 42 | 0.303 | 13.2 | -- | 0.919 | -- | -- | -- | -0.238 | 21.4 | -- | -- | -- | -- |
| 62.21 | 0.367 | 13.2 | -- | -- | 0.914 | -- | -- | -0.349 | -- | -5.492 | 949 | -- | -- |
| 91.51 | 0.447 | 13.2 | -- | -- | -- | -- | -- | -0.241 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.98 | wind | 1 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 2 | 28.00 | radiation | 40 | 270 | < th | dose independent | rect. | 10 | 21 |
| 3 | 28.04 | wind | 1 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 5 | 28.11 | wind | 1 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 8 | 28.16 | radiation | 40 | 270 | < th | dose dependent | rect. | 2 | 13 |
| 10 | 28.19 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 19 | 28.43 | radiation | 1 | 270 | > th | dose dependent | sin | 7 | NA |
| 32 | 28.52 | radiation | 40 | 270 | < th | dose dependent | rect. | 10 | 21 |
| 34 | 28.56 | radiation | 20 | 90 | < th | dose independent | rect. | 4 | 11 |
| 45 | 28.62 | radiation | 40 | 270 | < th | dose dependent | sin | 6 | NA |
| 56 | 28.67 | radiation | 1 | 270 | > th | dose dependent | rect. | 15 | 21 |
| 74 | 28.75 | radiation | 1 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 93 | 28.83 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 1 |
| 94 | 28.83 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 104 | 28.83 | wind | 5 | 14400 | < th | dose dependent | rect. | 11 | 4 |
| 115 | 28.87 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 116 | 28.87 | radiation | 1 | 270 | > th | dose dependent | rect. | 5 | 6 |
| 144 | 28.89 | temperature | 10 | 270 | > th | dose dependent | sin | 5 | NA |
| 153 | 28.90 | radiation | 40 | 10 | < th | dose dependent | rect. | 4 | 12 |
| 164 | 28.92 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 170 | 28.95 | wind | 5 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 173 | 28.96 | radiation | 10 | 270 | < th | dose independent | sin | 5 | NA |
| 176 | 28.96 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 194 | 29.01 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 11 | 20 |
| 195 | 29.01 | radiation | 1 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 203 | 29.03 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 213 | 29.05 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 252 | 29.11 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 12 | 21 |
| 265 | 29.13 | temperature | 30 | 270 | < th | dose dependent | sin | 4 | NA |
| 281 | 29.16 | radiation | 20 | 90 | < th | dose independent | rect. | 3 | 23 |
| 313 | 29.18 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 316 | 29.19 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 11 | 11 |
| 319 | 29.19 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 4 | 14 |
| 338 | 29.22 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 346 | 29.22 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 355 | 29.23 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 360 | 29.23 | humidity | 90 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 367 | 29.23 | humidity | 90 | 14400 | > th | dose dependent | sin | 7 | NA |
| 369 | 29.23 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 399 | 29.26 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 10 |
| 404 | 29.26 | temperature | 25 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 415 | 29.26 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 14 |
| 422 | 29.27 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 3 |
| 431 | 29.27 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 17 |
| 450 | 29.29 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 462 | 29.30 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 17 |
| 473 | 29.30 | wind | 1 | 43200 | < th | dose dependent | rect. | 9 | 16 |
| 481 | 29.31 | humidity | 80 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 492 | 29.32 | wind | 7 | 270 | < th | dose independent | rect. | 5 | 23 |
| 501 | 29.33 | wind | 1 | 43200 | > th | dose independent | rect. | 10 | 15 |
| 526 | 29.35 | humidity | 90 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 555 | 29.37 | radiation | 20 | 270 | > th | dose independent | rect. | 9 | 1 |
| 606 | 29.39 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 630 | 29.39 | temperature | 10 | 30 | > th | dose dependent | rect. | 9 | 19 |
| 633 | 29.40 | temperature | 20 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 648 | 29.40 | radiation | 40 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 657 | 29.41 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 4 | 18 |
| 659 | 29.41 | temperature | 25 | 43200 | < th | dose dependent | sin | 16 | NA |
| 674 | 29.41 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 11 |
| 686 | 29.42 | humidity | 90 | 14400 | > th | dose independent | sin | 9 | NA |
| 687 | 29.42 | temperature | 20 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 696 | 29.42 | temperature | 20 | 43200 | > th | dose independent | rect. | 16 | 13 |
| 707 | 29.42 | wind | 3 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 708 | 29.42 | temperature | 10 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 711 | 29.42 | radiation | 40 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 734 | 29.42 | temperature | 25 | 43200 | < th | dose dependent | rect. | 10 | 17 |
| 743 | 29.43 | temperature | 20 | 43200 | > th | dose independent | sin | 15 | NA |
| 749 | 29.43 | temperature | 25 | 10 | > th | dose independent | rect. | 4 | 5 |
| 753 | 29.43 | temperature | 20 | 43200 | > th | dose independent | rect. | 17 | 11 |
| 779 | 29.43 | radiation | 1 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 791 | 29.43 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 848 | 29.44 | radiation | 20 | 270 | > th | dose independent | rect. | 8 | 3 |
| 870 | 29.44 | wind | 1 | 43200 | < th | dose independent | rect. | 8 | 17 |
| 928 | 29.45 | temperature | 20 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 937 | 29.45 | wind | 1 | 43200 | < th | dose independent | rect. | 10 | 15 |
| 945 | 29.45 | temperature | 25 | 43200 | < th | dose dependent | no | NA | NA |
| 953 | 29.45 | radiation | 1 | 4320 | < th | dose dependent | rect. | 18 | 11 |
| 963 | 29.45 | temperature | 25 | 43200 | < th | dose dependent | rect. | 17 | 18 |
| 965 | 29.45 | temperature | 25 | 43200 | < th | dose dependent | rect. | 3 | 19 |