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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0467000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.08 (0.0446) R2 : 0.0862
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.33 (0.253) R2dC : 0.325 R2C : -0.384
β3 : -1.26 (0.2) R2dE : 0.463 R2E : -0.254
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.206 (0.0934) R2dN8 : 0.0128 R2N8 : 0.00221
σ : 0.827
deviance : 315.23
__
_____
C
peak time of C : 23.8
E
wheather : radiation
threshold : 0.3733
memory length : 88
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
313.03 0.831 3.08 0.113 1.32 -1.25 0.117 -0.672 -0.19 23.8 0.43 89 -- --
313.56 0.825 3.06 0.08 1.27 -1.19 -0.55 -- -0.169 23.7 0.44 88 -- --
313.01 0.824 3.08 0.104 1.32 -1.25 -- -0.577 -0.191 23.8 0.38 88 -- --
315 0.827 3.08 0.0949 1.32 -1.25 -- -- -0.195 23.8 0.38 88 -- --
331.22 0.848 3.05 0.127 -- -0.328 -- -0.689 -0.157 -- 0.009999 82 -- --
337.35 0.861 3.04 0.176 0.279 -- 0.534 -- -0.112 15.4 -- -- -- --
338 0.861 3.04 0.185 0.295 -- -- -- -0.108 16.3 -- -- -- --
333.54 0.851 3.06 0.147 -- -0.306 -- -- -0.156 -- 0.01798 82 -- --
315.23 0.827 3.08 -- 1.33 -1.26 -- -- -0.206 23.8 0.3733 88 -- --
342.69 0.865 3.04 0.174 -- -- -- -- -0.116 -- -- -- -- --
338.91 0.861 3.04 -- 0.291 -- -- -- -0.129 16.3 -- -- -- --
334.15 0.851 3.06 -- -- -0.306 -- -- -0.163 -- 0.009984 82 -- --
343.49 0.865 3.04 -- -- -- -- -- -0.135 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 313.12 temperature 25.0 10 > th dose independent rect. 17 1
2 314.45 radiation 1.0 90 < th dose dependent rect. 18 21
5 314.62 radiation 1.0 90 < th dose dependent rect. 18 16
8 314.65 radiation 1.0 90 < th dose dependent rect. 18 14
25 315.63 radiation 1.0 90 < th dose dependent rect. 13 21
28 315.69 radiation 1.0 90 < th dose dependent rect. 13 23
29 315.70 radiation 1.0 90 < th dose dependent rect. 15 22
31 315.72 radiation 1.0 90 < th dose dependent rect. 11 23
33 315.73 radiation 1.0 90 < th dose dependent rect. 15 19
36 315.74 radiation 1.0 90 < th dose dependent sin 12 NA
45 315.80 radiation 1.0 90 < th dose dependent no NA NA
47 315.80 radiation 1.0 90 < th dose dependent rect. 9 23
58 315.96 radiation 1.0 90 < th dose dependent rect. 7 23
73 316.33 wind 5.0 90 < th dose independent rect. 15 3
76 316.49 radiation 1.0 30 < th dose independent rect. 19 19
84 316.58 radiation 1.0 30 < th dose independent rect. 19 17
87 316.61 radiation 1.0 30 < th dose independent rect. 19 13
116 317.61 radiation 1.0 90 > th dose independent sin 11 NA
117 317.61 radiation 1.0 90 < th dose independent sin 12 NA
123 317.76 humidity 90.0 270 > th dose dependent rect. 14 1
126 317.79 humidity 60.0 90 > th dose independent rect. 18 11
127 317.80 humidity 90.0 270 > th dose independent rect. 14 1
130 317.82 radiation 1.0 30 > th dose independent rect. 17 15
133 317.88 radiation 1.0 30 > th dose independent rect. 17 2
150 318.14 wind 1.0 30 > th dose independent rect. 5 14
160 318.22 atmosphere 995.0 30 > th dose independent rect. 5 14
165 318.27 humidity 90.0 10 < th dose independent rect. 5 3
166 318.30 wind 1.0 90 < th dose dependent rect. 6 1
171 318.41 temperature 25.0 10 > th dose dependent rect. 17 15
173 318.43 precipitation 0.1 90 < th dose independent rect. 5 13
174 318.43 precipitation 0.1 90 < th dose dependent rect. 5 13
178 318.48 radiation 1.0 90 > th dose independent rect. 15 17
183 318.63 wind 7.0 90 < th dose dependent rect. 15 3
184 318.65 temperature 25.0 10 > th dose dependent rect. 17 1
185 318.65 radiation 1.0 90 > th dose dependent rect. 17 14
205 319.11 temperature 25.0 90 > th dose dependent rect. 17 1
207 319.15 radiation 10.0 1440 < th dose dependent rect. 19 10
212 319.21 temperature 30.0 90 < th dose independent rect. 18 11
219 319.26 radiation 10.0 270 < th dose dependent rect. 14 1
224 319.32 radiation 1.0 90 > th dose dependent rect. 16 17
230 319.44 precipitation 0.1 30 < th dose independent rect. 19 10
232 319.44 temperature 20.0 30 > th dose independent rect. 5 14
233 319.44 precipitation 0.1 30 < th dose dependent rect. 19 10
268 319.69 wind 9.0 30 < th dose independent rect. 5 14
269 319.71 temperature 10.0 30 > th dose independent rect. 19 10
273 319.71 atmosphere 995.0 30 > th dose independent rect. 19 10
279 319.71 temperature 10.0 30 > th dose independent rect. 5 14
281 319.71 atmosphere 1015.0 30 < th dose independent rect. 5 14
291 319.79 wind 9.0 30 < th dose independent rect. 19 10
313 319.99 radiation 1.0 90 < th dose dependent rect. 21 23
357 320.19 wind 7.0 10 < th dose dependent rect. 15 4
358 320.20 wind 5.0 90 < th dose independent rect. 15 17
362 320.22 atmosphere 995.0 270 > th dose independent rect. 3 14
425 320.48 radiation 1.0 90 > th dose independent rect. 14 23
508 320.85 radiation 1.0 90 < th dose dependent rect. 3 23
526 320.93 temperature 10.0 30 > th dose dependent rect. 5 14
540 321.11 radiation 1.0 90 < th dose independent rect. 7 22
541 321.13 radiation 1.0 90 < th dose independent rect. 13 16
544 321.16 wind 7.0 270 < th dose independent rect. 13 10
549 321.26 radiation 1.0 90 < th dose independent rect. 11 18
555 321.30 radiation 1.0 90 < th dose independent rect. 15 14
558 321.33 radiation 1.0 90 < th dose independent rect. 9 20
560 321.33 temperature 30.0 10 < th dose independent rect. 8 22
564 321.38 humidity 50.0 270 > th dose independent rect. 16 11
576 321.46 radiation 1.0 90 > th dose independent rect. 9 23
580 321.47 radiation 10.0 1440 < th dose independent rect. 19 10
583 321.49 temperature 30.0 90 < th dose dependent rect. 6 1
584 321.49 radiation 1.0 720 < th dose dependent rect. 23 16
592 321.56 radiation 1.0 90 > th dose dependent rect. 5 2
616 321.63 radiation 1.0 90 < th dose independent rect. 13 21
621 321.66 radiation 1.0 90 > th dose independent rect. 4 4
640 321.70 radiation 1.0 90 < th dose independent rect. 13 23
644 321.72 radiation 1.0 90 < th dose independent rect. 11 23
661 321.76 radiation 1.0 720 < th dose dependent rect. 23 13
665 321.77 precipitation 0.1 270 < th dose independent rect. 3 14
672 321.77 precipitation 0.1 270 < th dose dependent rect. 3 14
674 321.78 radiation 1.0 90 > th dose independent rect. 5 14
686 321.79 radiation 1.0 720 < th dose independent rect. 23 8
687 321.80 radiation 1.0 90 > th dose independent no NA NA
736 321.81 radiation 1.0 90 < th dose independent no NA NA
754 321.86 atmosphere 1000.0 90 > th dose independent rect. 5 3
761 321.88 temperature 15.0 270 > th dose independent rect. 3 14
773 321.93 wind 9.0 270 < th dose independent rect. 3 14
779 322.01 temperature 25.0 720 > th dose dependent rect. 15 22
781 322.03 radiation 20.0 270 < th dose independent rect. 16 11
784 322.04 atmosphere 1000.0 10 > th dose independent rect. 6 2
792 322.07 radiation 40.0 270 < th dose dependent rect. 16 11
806 322.16 atmosphere 1015.0 270 < th dose independent rect. 3 14
818 322.22 temperature 25.0 720 > th dose independent rect. 17 20
819 322.23 atmosphere 995.0 10 > th dose independent rect. 15 4
834 322.26 temperature 30.0 270 < th dose dependent rect. 3 4
850 322.29 temperature 10.0 30 > th dose dependent rect. 19 10
887 322.40 radiation 1.0 90 > th dose independent rect. 6 1
889 322.42 radiation 1.0 720 > th dose independent rect. 4 4
930 322.49 temperature 25.0 10 > th dose dependent rect. 17 7
940 322.53 humidity 50.0 90 > th dose dependent rect. 18 11
941 322.54 atmosphere 995.0 90 > th dose independent rect. 15 17
945 322.55 atmosphere 1000.0 270 > th dose independent rect. 3 5
951 322.58 wind 1.0 90 < th dose independent rect. 6 1
991 322.70 wind 9.0 30 < th dose dependent rect. 19 20