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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0466000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.42 (0.0588) R2 : 0.772
β1 : -5.27 (0.218) R2dD : 0.341 R2D : 0.328
β2 : 3.14 (0.136) R2dC : 0.27 R2C : 0.274
β3 : 1.59 (0.184) R2dE : 0.0439 R2E : 0.101
β4 : -2.48 (0.53) R2dD*C : 0.0112 R2D*C : -0.0101
β5 : -4.01 (0.745) R2dD*E : 0.0164 R2D*E : 0.0423
γ1 : -0.966 (0.131) R2dN8 : 0.0435 R2N8 : 0.0249
σ : 1.06
deviance : 507.22
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_____
C
peak time of C : 22.3
E
wheather : radiation
threshold : 15.67
memory length : 1347
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 7.62
open length of G : 5.67

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
507.22 1.06 5.42 -5.27 3.14 1.59 -2.48 -4.01 -0.966 22.3 15.67 1347 7.62 5.67
536.1 1.08 5.43 -5.33 3.21 1.74 -2.51 -- -0.953 22.2 14.04 1371 7.33 6.23
525.91 1.07 5.43 -5 3.04 1.58 -- -4.74 -0.98 22.3 16.68 1189 8.25 6.39
564.35 1.11 5.44 -5.29 3.2 1.71 -- -- -0.956 22.2 13.11 1355 7.33 6.16
625.28 1.16 5.54 -6.24 -- 3.45 -- -5.08 -1.61 -- 54.69 991 9.83 8.02
616.83 1.16 5.58 -5.93 3.24 -- -2.95 -- -1.5 22.2 -- -- -- --
651.54 1.2 5.58 -5.81 3.25 -- -- -- -1.49 22.2 -- -- -- --
654.08 1.19 5.49 -5.84 -- 2.31 -- -- -1.53 -- 79.91 673 15 3.52
1241.62 1.64 5.44 -- 2.81 2.77 -- -- -0.668 22.2 10.31 1371 7.95 5.62
1293.16 1.68 5.49 -5.77 -- -- -- -- -1.49 -- -- -- -- --
1542.37 1.84 5.43 -- 3.23 -- -- -- -0.845 22.1 -- -- -- --
1525.68 1.82 5.34 -- -- 2.65 -- -- -0.801 -- 110.7 651 14.9 3.67
2170.58 2.17 5.35 -- -- -- -- -- -0.846 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 515.35 radiation 40 1440 < th dose dependent rect. 6 8
2 515.50 radiation 40 1440 < th dose dependent rect. 7 6
8 515.97 radiation 40 1440 < th dose dependent rect. 2 12
13 516.16 radiation 40 1440 < th dose dependent rect. 19 19
15 516.18 radiation 40 1440 < th dose dependent rect. 22 16
52 517.70 radiation 20 1440 < th dose independent rect. 7 6
62 518.22 radiation 20 1440 < th dose independent rect. 2 11
66 518.25 radiation 20 1440 < th dose independent rect. 18 19
73 518.42 radiation 20 1440 < th dose independent rect. 22 15
79 518.82 radiation 1 1440 > th dose dependent rect. 6 8
146 519.83 radiation 40 1440 < th dose dependent sin 6 NA
198 521.19 radiation 1 1440 > th dose dependent sin 7 NA
208 521.52 radiation 20 1440 < th dose independent sin 6 NA
209 521.55 radiation 20 1440 > th dose independent rect. 8 5
248 522.52 radiation 10 720 < th dose independent rect. 13 5
265 522.67 radiation 20 1440 < th dose independent rect. 8 2
448 525.16 radiation 10 1440 > th dose independent sin 7 NA
466 525.57 radiation 10 720 < th dose independent rect. 10 8
832 529.88 radiation 30 1440 < th dose independent rect. 11 2
855 529.95 radiation 40 1440 < th dose dependent rect. 11 2
857 529.98 radiation 10 1440 < th dose independent rect. 6 15
860 530.02 radiation 10 1440 < th dose independent rect. 6 17
866 530.08 radiation 10 1440 < th dose independent rect. 6 22
892 530.42 radiation 30 1440 > th dose independent rect. 11 2
895 530.46 radiation 10 1440 > th dose dependent rect. 11 2
938 531.15 radiation 10 720 < th dose independent rect. 16 1
973 531.41 radiation 10 1440 < th dose independent rect. 12 23